Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   IC787_RS08760 Genome accession   NZ_CP061598
Coordinates   1827250..1827630 (+) Length   126 a.a.
NCBI ID   WP_019458993.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS58     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1822250..1832630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC787_RS08730 (IC787_08725) kdsB 1823153..1823914 (+) 762 WP_049064951.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IC787_RS08735 (IC787_08730) - 1823926..1824906 (+) 981 WP_077168508.1 DNA polymerase III subunit delta' -
  IC787_RS08740 (IC787_08735) - 1824919..1825260 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  IC787_RS08745 (IC787_08740) - 1825278..1826051 (+) 774 WP_077168509.1 TatD family hydrolase -
  IC787_RS08750 (IC787_08745) - 1826089..1826697 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  IC787_RS08755 (IC787_08750) - 1826707..1827260 (+) 554 Protein_1718 type II secretion system protein -
  IC787_RS08760 (IC787_08755) xcpV 1827250..1827630 (+) 381 WP_019458993.1 type II secretion system minor pseudopilin GspI Machinery gene
  IC787_RS08765 (IC787_08760) xcpW 1827630..1828445 (+) 816 WP_077168510.1 type II secretion system minor pseudopilin GspJ Machinery gene
  IC787_RS08770 (IC787_08765) gspK 1828445..1829401 (+) 957 WP_077168511.1 type II secretion system minor pseudopilin GspK -
  IC787_RS08775 (IC787_08770) - 1829631..1830227 (+) 597 WP_077168512.1 6-carboxytetrahydropterin synthase -
  IC787_RS08780 (IC787_08775) ung 1830278..1830991 (+) 714 WP_077168513.1 uracil-DNA glycosylase -
  IC787_RS08785 (IC787_08780) - 1830988..1832112 (+) 1125 WP_019458997.1 enoyl-CoA hydratase/isomerase family protein -
  IC787_RS08790 (IC787_08785) tadA 1832120..1832621 (+) 502 Protein_1725 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13976.19 Da        Isoelectric Point: 9.4463

>NTDB_id=483488 IC787_RS08760 WP_019458993.1 1827250..1827630(+) (xcpV) [Acinetobacter seifertii strain AS58]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKIDVQISLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=483488 IC787_RS08760 WP_019458993.1 1827250..1827630(+) (xcpV) [Acinetobacter seifertii strain AS58]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTAGCAGCTGTCGCTTTAACTAA
AGTGGCTATGCAGTACACTCAGTCTACCTCTAATGCGATTTTACGAACCAAAGCTCAATTTGTGGCAATGAATGAAATTG
CTATGATGGAGATTAATCAAGAGTGGTTGCAGGGTACTCAAAGTAAGCAAGTAACCTCTCAAGGTGAGACTTGGCAGATT
GATAAATCAGCTGAATCGACTGTTAGCCCTAATGTTCAAAAAATTGATGTACAAATTAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

96.032

100

0.96