Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   IC788_RS09950 Genome accession   NZ_CP061596
Coordinates   2127381..2127761 (-) Length   126 a.a.
NCBI ID   WP_191000187.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS59     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2122381..2132761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC788_RS09920 (IC788_09920) tadA 2122386..2122888 (-) 503 Protein_1944 tRNA adenosine(34) deaminase TadA -
  IC788_RS09925 (IC788_09925) - 2122896..2124020 (-) 1125 WP_019458997.1 enoyl-CoA hydratase/isomerase family protein -
  IC788_RS09930 (IC788_09930) ung 2124017..2124730 (-) 714 WP_004701973.1 uracil-DNA glycosylase -
  IC788_RS09935 (IC788_09935) - 2124781..2125377 (-) 597 WP_191000184.1 6-pyruvoyl trahydropterin synthase family protein -
  IC788_RS09940 (IC788_09940) gspK 2125607..2126566 (-) 960 WP_191000185.1 type II secretion system minor pseudopilin GspK -
  IC788_RS09945 (IC788_09945) xcpW 2126566..2127381 (-) 816 WP_191000186.1 type II secretion system minor pseudopilin GspJ Machinery gene
  IC788_RS09950 (IC788_09950) xcpV 2127381..2127761 (-) 381 WP_191000187.1 type II secretion system minor pseudopilin GspI Machinery gene
  IC788_RS09955 (IC788_09955) - 2127751..2128302 (-) 552 WP_004701984.1 type II secretion system protein -
  IC788_RS09960 (IC788_09960) - 2128312..2128920 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  IC788_RS09965 (IC788_09965) - 2128958..2129731 (-) 774 WP_191000188.1 TatD family hydrolase -
  IC788_RS09970 (IC788_09970) - 2129749..2130090 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  IC788_RS09975 (IC788_09975) - 2130103..2131083 (-) 981 WP_191000189.1 DNA polymerase III subunit delta' -
  IC788_RS09980 (IC788_09980) kdsB 2131095..2131856 (-) 762 WP_191000190.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.16 Da        Isoelectric Point: 9.4463

>NTDB_id=483442 IC788_RS09950 WP_191000187.1 2127381..2127761(-) (xcpV) [Acinetobacter seifertii strain AS59]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSNSNAILRTKAQFVAMNEIAMMEINQEWLQGTQSKQVTSQGETWQV
DKSAESTVSPNVQKIDVQISLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=483442 IC788_RS09950 WP_191000187.1 2127381..2127761(-) (xcpV) [Acinetobacter seifertii strain AS59]
ATGAAATCTAAAGGCTTTACCCTATTAGAAGTTATGGTAGCTCTTGCAATCTTTGCTGTAGCAGCTGTTGCTTTAACTAA
AGTAGCAATGCAGTACACACAGTCTAATTCTAATGCAATTTTACGAACCAAAGCTCAATTTGTAGCAATGAATGAAATTG
CTATGATGGAGATTAACCAAGAGTGGTTGCAAGGCACTCAAAGTAAGCAGGTAACTTCTCAAGGTGAGACATGGCAGGTT
GATAAATCAGCTGAATCAACTGTGAGCCCTAATGTTCAAAAAATTGATGTACAAATCAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

94.444

100

0.944