Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IC788_RS02015 Genome accession   NZ_CP061596
Coordinates   424553..425188 (-) Length   211 a.a.
NCBI ID   WP_191001069.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS59     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 419553..430188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC788_RS01980 (IC788_01980) mlaE 419881..420657 (+) 777 WP_004705340.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  IC788_RS01985 (IC788_01985) - 420657..421340 (+) 684 WP_019457797.1 outer membrane lipid asymmetry maintenance protein MlaD -
  IC788_RS01990 (IC788_01990) - 421367..422008 (+) 642 WP_191001068.1 phospholipid-binding protein MlaC -
  IC788_RS01995 (IC788_01995) - 422020..422307 (+) 288 WP_086496846.1 lipid asymmetry maintenance protein MlaB -
  IC788_RS02000 (IC788_02000) - 422382..423395 (-) 1014 WP_004705344.1 magnesium and cobalt transport protein CorA -
  IC788_RS02005 (IC788_02005) - 423553..424134 (+) 582 WP_004705346.1 TIGR00730 family Rossman fold protein -
  IC788_RS02010 (IC788_02010) - 424149..424547 (+) 399 WP_151761604.1 NUDIX hydrolase -
  IC788_RS02015 (IC788_02015) comF 424553..425188 (-) 636 WP_191001069.1 ComF family protein Machinery gene
  IC788_RS02020 (IC788_02020) recG 425181..427226 (-) 2046 WP_191001070.1 ATP-dependent DNA helicase RecG -
  IC788_RS02025 (IC788_02025) - 427247..428074 (+) 828 WP_019457791.1 NAD-dependent epimerase/dehydratase family protein -
  IC788_RS02030 (IC788_02030) - 428142..429128 (+) 987 WP_025465167.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24452.72 Da        Isoelectric Point: 9.8412

>NTDB_id=483433 IC788_RS02015 WP_191001069.1 424553..425188(-) (comF) [Acinetobacter seifertii strain AS59]
MFKLFNPQYLFQLLSPCLLCEIGTRGKHSLCKECWEQLPWLNQTVQRNDQSVLVACHYTYPINRIIQQFKYEQKLHYQTL
LAEILQQIKFPKVQAIVPMPISKERLTERGFNQSLLLAKLLSKQLKIPVWQPVQRLNERSQKGLSRLERFKNIEQQFVAI
TQEKRRYCRVLIIDDVITTGSSISALSLVLKQLGCTSIYASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=483433 IC788_RS02015 WP_191001069.1 424553..425188(-) (comF) [Acinetobacter seifertii strain AS59]
ATGTTTAAGTTGTTCAATCCTCAATATCTTTTTCAGTTATTGTCCCCTTGCCTGTTATGTGAAATAGGAACGCGGGGTAA
GCACTCTCTTTGTAAAGAATGTTGGGAACAACTACCATGGCTTAACCAGACAGTTCAGCGTAATGATCAATCTGTTCTTG
TGGCCTGTCATTATACCTATCCAATTAACCGCATAATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTTGCTGAAATTTTACAGCAGATAAAATTTCCTAAAGTACAGGCCATAGTACCTATGCCTATTTCTAAAGAGCGTTTAAC
TGAGCGAGGTTTTAATCAATCATTATTACTTGCCAAACTCCTAAGCAAGCAATTAAAAATACCCGTTTGGCAGCCTGTCC
AACGCCTCAATGAGCGTTCACAAAAAGGATTATCTCGTCTCGAAAGATTTAAAAATATTGAACAGCAATTTGTTGCGATA
ACTCAAGAAAAACGGCGCTACTGTCGTGTGCTGATTATTGATGATGTGATCACAACAGGAAGTTCAATTTCCGCTTTAAG
TCTGGTGCTAAAACAGCTAGGGTGCACATCTATTTATGCAAGCTGCCTAGCTGCTGCCTCATCTACATCATATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

90.995

100

0.91
  comF Acinetobacter baumannii D1279779

90.047

100

0.9