Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   IC788_RS01650 Genome accession   NZ_CP061596
Coordinates   351901..352383 (+) Length   160 a.a.
NCBI ID   WP_134262467.1    Uniprot ID   A0A5E9PQU1
Organism   Acinetobacter seifertii strain AS59     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 346901..357383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC788_RS18585 - 347704..347889 (+) 186 Protein_316 hypothetical protein -
  IC788_RS01645 (IC788_01645) - 348919..351888 (+) 2970 Protein_317 PilC/PilY family type IV pilus protein -
  IC788_RS01650 (IC788_01650) pilY2 351901..352383 (+) 483 WP_134262467.1 type IV pilin protein Machinery gene
  IC788_RS01655 (IC788_01655) pilE 352380..352805 (+) 426 WP_134262465.1 type IV pilin protein Machinery gene
  IC788_RS01660 (IC788_01660) rpsP 352952..353203 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  IC788_RS01665 (IC788_01665) rimM 353223..353771 (+) 549 WP_100191762.1 ribosome maturation factor RimM -
  IC788_RS01670 (IC788_01670) trmD 353817..354572 (+) 756 WP_077163627.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  IC788_RS01675 (IC788_01675) rplS 354792..355160 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  IC788_RS01680 (IC788_01680) - 355214..356155 (-) 942 WP_079393460.1 lipase family alpha/beta hydrolase -
  IC788_RS01685 (IC788_01685) - 356276..357310 (-) 1035 WP_191001040.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17526.76 Da        Isoelectric Point: 9.1549

>NTDB_id=483431 IC788_RS01650 WP_134262467.1 351901..352383(+) (pilY2) [Acinetobacter seifertii strain AS59]
MSKYYNLKFNRGFTLIELMVTLLTLAILVAIAVPSYQSYARRATASAAKSEILKLAERLEQHKSRNFTYRGFTTTSVTLT
RGGYTIQITDDTTAGNLLTSSAANGQTWVIRATTTDSRNLNFIVKNSGLRCQSLTATAVDNDCGGTTTCNTCEANSESWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=483431 IC788_RS01650 WP_134262467.1 351901..352383(+) (pilY2) [Acinetobacter seifertii strain AS59]
ATGAGTAAATACTATAATTTGAAGTTCAATCGGGGTTTTACTCTGATTGAACTTATGGTCACTCTTCTTACTTTAGCTAT
TCTTGTTGCTATTGCTGTTCCTTCTTATCAAAGTTATGCCCGTAGAGCTACCGCATCTGCCGCTAAGAGTGAGATTTTAA
AATTAGCTGAGCGATTGGAGCAGCATAAGTCTAGAAATTTTACCTATAGGGGATTTACCACAACCTCTGTAACGTTAACT
CGTGGCGGGTATACGATTCAGATCACTGATGATACGACTGCTGGTAATTTATTAACGAGTTCTGCTGCGAATGGGCAGAC
ATGGGTGATTAGAGCGACTACTACAGATTCCAGAAATCTTAATTTTATTGTTAAAAACTCAGGTTTACGTTGCCAGAGCT
TAACAGCTACTGCTGTTGATAATGATTGTGGTGGAACAACTACATGTAATACATGTGAAGCAAATAGTGAGAGTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E9PQU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

83.125

100

0.831
  comE Acinetobacter baylyi ADP1

37.209

100

0.4