Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   IC789_RS18320 Genome accession   NZ_CP061592
Coordinates   3815887..3816363 (-) Length   158 a.a.
NCBI ID   WP_077168933.1    Uniprot ID   A0A7H2RTD0
Organism   Acinetobacter seifertii strain AS60     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3810887..3821363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC789_RS18285 (IC789_18280) - 3810924..3811958 (+) 1035 WP_004705246.1 lipase secretion chaperone -
  IC789_RS18290 (IC789_18285) - 3812078..3813019 (+) 942 WP_077168936.1 lipase family alpha/beta hydrolase -
  IC789_RS18295 (IC789_18290) rplS 3813073..3813441 (-) 369 WP_002116654.1 50S ribosomal protein L19 -
  IC789_RS18300 (IC789_18295) trmD 3813661..3814416 (-) 756 WP_077168935.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  IC789_RS18305 (IC789_18300) rimM 3814462..3815010 (-) 549 WP_004705239.1 ribosome maturation factor RimM -
  IC789_RS18310 (IC789_18305) rpsP 3815030..3815281 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  IC789_RS18315 (IC789_18310) - 3815429..3815893 (-) 465 WP_077168934.1 type IV pilin protein -
  IC789_RS18320 (IC789_18315) comE 3815887..3816363 (-) 477 WP_077168933.1 type IV pilin protein Machinery gene
  IC789_RS18325 (IC789_18320) - 3816377..3820048 (-) 3672 WP_077168932.1 PilC/PilY family type IV pilus protein -
  IC789_RS18330 (IC789_18325) - 3820064..3820846 (-) 783 WP_049066361.1 pilus assembly PilX N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17230.71 Da        Isoelectric Point: 9.9755

>NTDB_id=483412 IC789_RS18320 WP_077168933.1 3815887..3816363(-) (comE) [Acinetobacter seifertii strain AS60]
MKRNFTYSLGFTLIELMIVVVIVAIFAAVAIPSYQAYVLRADASRAQQQMQQIAVQLARQKSRNFNYKGFSMGATSSVNL
PVGATGSAIKYKITVRDGDDTTKPLTDPAALGQNWVIRAEASDPNNFTYLFGSNGLRCKNKATSNVTYITCGTGAETW

Nucleotide


Download         Length: 477 bp        

>NTDB_id=483412 IC789_RS18320 WP_077168933.1 3815887..3816363(-) (comE) [Acinetobacter seifertii strain AS60]
ATGAAACGTAATTTCACGTATTCTTTAGGCTTTACTCTTATTGAGCTAATGATTGTAGTTGTGATTGTTGCTATTTTTGC
CGCAGTTGCAATACCTTCATACCAAGCCTATGTTCTACGAGCGGATGCTTCACGTGCGCAGCAGCAAATGCAACAGATCG
CAGTACAACTTGCACGTCAGAAATCTAGAAATTTTAATTACAAAGGCTTTTCTATGGGCGCTACATCATCTGTAAATTTG
CCTGTTGGAGCAACTGGTAGTGCTATAAAATATAAAATAACGGTACGCGATGGTGACGATACAACGAAACCTTTAACAGA
TCCTGCAGCTTTAGGGCAAAACTGGGTGATTCGAGCAGAGGCTTCCGATCCTAATAATTTTACTTATTTGTTTGGTAGTA
ACGGATTACGTTGTAAAAATAAAGCTACTAGCAATGTTACTTATATAACTTGTGGCACCGGAGCTGAGACGTGGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(32-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2RTD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

46.061

100

0.481
  pilY2 Acinetobacter baumannii D1279779

45

100

0.456