Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IC789_RS17950 Genome accession   NZ_CP061592
Coordinates   3741775..3742410 (+) Length   211 a.a.
NCBI ID   WP_151792563.1    Uniprot ID   A0A7H2UIQ4
Organism   Acinetobacter seifertii strain AS60     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3736775..3747410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC789_RS17935 (IC789_17930) - 3737835..3738821 (-) 987 WP_077169004.1 putative solute-binding protein -
  IC789_RS17940 (IC789_17935) - 3738889..3739716 (-) 828 WP_077168974.1 NAD-dependent epimerase/dehydratase family protein -
  IC789_RS17945 (IC789_17940) recG 3739737..3741782 (+) 2046 WP_039253566.1 ATP-dependent DNA helicase RecG -
  IC789_RS17950 (IC789_17945) comF 3741775..3742410 (+) 636 WP_151792563.1 ComF family protein Machinery gene
  IC789_RS17955 (IC789_17950) - 3742416..3742814 (-) 399 WP_100193358.1 NUDIX hydrolase -
  IC789_RS17960 (IC789_17955) - 3742829..3743410 (-) 582 WP_151761605.1 TIGR00730 family Rossman fold protein -
  IC789_RS17965 (IC789_17960) - 3743568..3744581 (+) 1014 WP_004705344.1 magnesium and cobalt transport protein CorA -
  IC789_RS17970 (IC789_17965) - 3744655..3744942 (-) 288 WP_019457795.1 lipid asymmetry maintenance protein MlaB -
  IC789_RS17975 (IC789_17970) - 3744954..3745595 (-) 642 WP_049064976.1 phospholipid-binding protein MlaC -
  IC789_RS17980 (IC789_17975) - 3745622..3746305 (-) 684 WP_019457797.1 outer membrane lipid asymmetry maintenance protein MlaD -
  IC789_RS17985 (IC789_17980) mlaE 3746305..3747081 (-) 777 WP_004705340.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24465.79 Da        Isoelectric Point: 9.9683

>NTDB_id=483411 IC789_RS17950 WP_151792563.1 3741775..3742410(+) (comF) [Acinetobacter seifertii strain AS60]
MFKLFNPQYLFQLLSPCLLCEIGTRGKHSLCKECWEQLPWLKQAVQRNDLSVLVACHYAYPINHIIQQFKYEQKLHYQIL
LAEILQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLAKLLSKQLRIPVWQPVQRLNERSQKGLSRLERFENIEQQFVAI
TQEKRRYRRVLIIDDVITTGSSISALSLVLKQLGCTSIYASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=483411 IC789_RS17950 WP_151792563.1 3741775..3742410(+) (comF) [Acinetobacter seifertii strain AS60]
ATGTTTAAGTTGTTCAATCCTCAATATCTTTTTCAGTTATTGTCCCCTTGCCTGTTATGTGAAATAGGAACGCGGGGTAA
GCACTCGCTTTGTAAAGAATGTTGGGAACAACTACCATGGCTTAAGCAGGCAGTTCAGCGTAATGATCTATCTGTTCTTG
TGGCCTGTCATTATGCCTATCCAATTAACCACATAATTCAGCAGTTTAAATATGAACAGAAATTACATTACCAAATCCTA
CTTGCTGAAATTTTACAGCAATTAAAATTTCCTAAGGTACAAGCCATAGTACCTATGCCTATTTCTAAACAACGTTTAAC
GGAACGTGGTTTTAATCAATCATTATTACTTGCCAAGCTTCTAAGTAAACAATTAAGAATACCCGTTTGGCAGCCTGTCC
AACGCCTCAATGAGCGCTCTCAAAAAGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGATA
ACTCAAGAAAAACGGCGCTACCGTCGTGTGCTGATTATTGATGATGTGATCACAACAGGAAGTTCAATTTCCGCTTTAAG
TCTGGTGCTAAAACAGCTAGGGTGCACATCTATTTATGCAAGCTGCCTAGCTGCTGCCTCATCTACATCATATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2UIQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

91.469

100

0.915
  comF Acinetobacter baumannii D1279779

90.521

100

0.905