Detailed information NTG0483302

Bioinformatically predicted

Overview

• Name: comC
• Type: Machinery gene
• Locus tag: IC793_RS21250
• Genome accession: NZ_CP061571
• Coordinates: 405022..406185 (+)
• Length: 387 a.a.
• NCBI ID: WP_307887527.1
• Uniprot ID: -
• Organism: Acinetobacter seifertii strain AS70
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 400022..411185

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IC793_RS01955 (IC793_01955)	fimU	400454..400927 (+)	474	WP_151682770.1	Tfp pilus assembly protein FimT/FimU	Machinery gene
IC793_RS01960 (IC793_01960)	pilV	400927..401431 (+)	505	Protein_380	type IV pilus modification protein PilV	-
IC793_RS01965 (IC793_01965)	-	401431..402405 (+)	975	WP_151682768.1	PilW family protein	-
IC793_RS01970 (IC793_01970)	-	402408..403172 (+)	765	WP_151682767.1	pilus assembly protein PilX	-
IC793_RS21245	-	403184..405049 (+)	1866	WP_307887526.1	hypothetical protein	-
IC793_RS21250	comC	405022..406185 (+)	1164	WP_307887527.1	PilC/PilY family type IV pilus protein	Machinery gene
IC793_RS21255	-	406338..406961 (+)	624	WP_307887528.1	hypothetical protein	-
IC793_RS01980 (IC793_01980)	-	406974..407453 (+)	480	WP_151682765.1	type IV pilin protein	-
IC793_RS01985 (IC793_01985)	-	407447..407911 (+)	465	WP_151682764.1	type IV pilin protein	-
IC793_RS01990 (IC793_01990)	rpsP	408059..408310 (+)	252	WP_000260334.1	30S ribosomal protein S16	-
IC793_RS01995 (IC793_01995)	rimM	408330..408878 (+)	549	WP_004705239.1	ribosome maturation factor RimM	-
IC793_RS02000 (IC793_02000)	trmD	408924..409679 (+)	756	WP_151682763.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
IC793_RS02005 (IC793_02005)	rplS	409899..410267 (+)	369	WP_002116654.1	50S ribosomal protein L19	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 41986.82 Da
• Isoelectric Point: 6.5049

>NTDB_id=483302 IC793_RS21250 WP_307887527.1 405022..406185(+) (comC) [Acinetobacter seifertii strain AS70]
MDGGVKSQLALRTSATNTDTANRKLLTNRSISGTGTTLTISESSATTLKQINLSYLTEDSYKEDPQRGYLMNLLGYAVDA
TKPQTINATLLSTASELRQVGAVMHSSPILITNKGEITYSNNTLGSKNREDYIVFGTTQGLLHVVDASTGKEKFAFVPNE
MVDNQYKAFAKFDSTNGGMQNLFYGVDGPWSAYTEYVADSSGNLTVGTGKNSLKGKQYVYGGLRMGGNSYYALDLADINN
PKLKFHIDPLNQKVYFNGNSKTFDALQYMGQSWSKPTIAWVKWGGVRKLVMFVGGGYDAGYESDSYSQTNKTGAGVYMFD
AENGDLLWWASDNATASSAATTTSGLVATKNSNLKYSVVSEIKAIDRDADGLVDHLYFGDLGGKFFA

Nucleotide

• Length: 1164 bp

>NTDB_id=483302 IC793_RS21250 WP_307887527.1 405022..406185(+) (comC) [Acinetobacter seifertii strain AS70]
ATGGATGGGGGAGTTAAATCACAGTTAGCATTACGTACATCAGCAACTAATACTGATACGGCCAATCGTAAGTTATTAAC
GAATAGAAGTATAAGTGGAACAGGGACTACATTAACCATAAGTGAAAGTTCGGCAACTACTTTAAAGCAAATAAATTTGA
GTTACTTAACTGAGGATAGTTATAAAGAAGATCCTCAACGTGGCTATTTAATGAACTTGCTTGGCTACGCCGTTGATGCA
ACTAAACCGCAAACTATTAATGCAACATTATTATCTACAGCATCCGAACTTCGACAAGTTGGAGCTGTAATGCATTCATC
ACCTATATTAATTACAAACAAAGGTGAAATTACATATAGCAATAATACTTTGGGTTCAAAAAATCGAGAGGATTATATCG
TTTTCGGTACAACACAAGGTTTATTGCATGTAGTTGATGCTTCAACTGGAAAAGAAAAATTTGCTTTTGTTCCAAATGAA
ATGGTTGATAATCAATATAAAGCATTTGCAAAATTTGATTCAACGAATGGGGGAATGCAGAATCTGTTTTATGGTGTAGA
TGGGCCTTGGAGTGCTTACACGGAGTATGTAGCTGATAGCAGTGGTAACTTAACAGTGGGGACGGGTAAAAATAGCTTAA
AGGGAAAACAATACGTATATGGTGGTTTGCGTATGGGAGGTAATAGTTATTACGCACTTGATTTAGCTGATATCAATAAT
CCTAAACTAAAATTTCATATTGATCCTCTTAACCAGAAAGTATATTTCAATGGTAATTCAAAGACATTTGATGCTCTCCA
ATATATGGGGCAAAGTTGGTCAAAACCAACAATTGCATGGGTAAAATGGGGTGGGGTGCGTAAGCTGGTTATGTTTGTCG
GTGGAGGATATGACGCTGGCTATGAAAGTGATAGCTATAGTCAAACAAACAAAACTGGTGCAGGTGTATATATGTTTGAT
GCAGAAAATGGCGATTTACTTTGGTGGGCAAGTGATAATGCTACTGCGTCAAGTGCTGCTACAACAACTTCAGGTTTAGT
TGCGACCAAAAATAGTAATCTTAAATATAGCGTTGTTAGTGAAATTAAAGCAATTGATCGTGATGCTGATGGCTTAGTCG
ATCATCTTTATTTTGGAGACTTAGGGGGCAAGTTTTTCGCATAG

Domains

Predicted by InterproScan.

• Neisseria PilC beta-propeller domain (T4P_PilY1) (118-386)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comC	Acinetobacter baylyi ADP1	47.619	100	0.517