Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   IC793_RS01955 Genome accession   NZ_CP061571
Coordinates   400454..400927 (+) Length   157 a.a.
NCBI ID   WP_151682770.1    Uniprot ID   A0A7H2PS93
Organism   Acinetobacter seifertii strain AS70     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 395454..405927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC793_RS01930 (IC793_01930) - 395919..398024 (-) 2106 WP_004705224.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  IC793_RS01935 (IC793_01935) - 398064..398194 (-) 131 Protein_375 hypothetical protein -
  IC793_RS01940 (IC793_01940) rpoZ 398233..398511 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  IC793_RS01945 (IC793_01945) gmk 398584..399213 (-) 630 WP_004705226.1 guanylate kinase -
  IC793_RS01950 (IC793_01950) ispH 399336..400286 (+) 951 WP_004705229.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IC793_RS01955 (IC793_01955) fimU 400454..400927 (+) 474 WP_151682770.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  IC793_RS01960 (IC793_01960) pilV 400927..401431 (+) 505 Protein_380 type IV pilus modification protein PilV -
  IC793_RS01965 (IC793_01965) - 401431..402405 (+) 975 WP_151682768.1 PilW family protein -
  IC793_RS01970 (IC793_01970) - 402408..403172 (+) 765 WP_151682767.1 pilus assembly protein PilX -
  IC793_RS21245 - 403184..405049 (+) 1866 WP_307887526.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17134.73 Da        Isoelectric Point: 6.7065

>NTDB_id=483274 IC793_RS01955 WP_151682770.1 400454..400927(+) (fimU) [Acinetobacter seifertii strain AS70]
MRGIIPQEGFTLIELMVTIAVMAVIAVMAVPSMSNILEAKHFDDNQNNLMQTFNLARSQAVLNRTNVSVNLNSNAANTST
NFNWIADQHNSLELRLLAADGTTTLLSMQNITFIANGTVSGISQDLLVSMCNSQLHIKKSFVLSKLGSTFMNPKESC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=483274 IC793_RS01955 WP_151682770.1 400454..400927(+) (fimU) [Acinetobacter seifertii strain AS70]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTAATTGAGCTCATGGTAACCATCGCAGTGATGGCAGTTATTGCTGT
GATGGCTGTGCCGTCTATGTCAAATATACTGGAAGCAAAGCATTTTGATGATAATCAAAATAACTTGATGCAAACGTTTA
ATCTGGCAAGAAGCCAAGCTGTACTAAATCGTACAAATGTTTCTGTAAATTTAAACTCAAATGCTGCTAATACCTCAACA
AATTTTAACTGGATTGCAGACCAGCATAATAGTCTTGAGTTAAGACTTTTGGCAGCAGATGGAACAACAACTCTTCTATC
GATGCAAAATATCACATTTATAGCAAATGGAACCGTTTCTGGTATTTCTCAAGATTTGCTTGTTTCTATGTGTAATTCTC
AACTACATATTAAGAAAAGTTTTGTTTTATCAAAATTGGGTTCTACCTTCATGAATCCAAAGGAAAGTTGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2PS93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

57.325

100

0.573