Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IC793_RS02350 Genome accession   NZ_CP061571
Coordinates   479950..480585 (-) Length   211 a.a.
NCBI ID   WP_151683693.1    Uniprot ID   A0A7H2PSG8
Organism   Acinetobacter seifertii strain AS70     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 474950..485585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC793_RS02315 (IC793_02315) mlaE 475278..476054 (+) 777 WP_004705340.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  IC793_RS02320 (IC793_02320) - 476054..476737 (+) 684 WP_019457797.1 outer membrane lipid asymmetry maintenance protein MlaD -
  IC793_RS02325 (IC793_02325) - 476764..477405 (+) 642 WP_039253560.1 phospholipid-binding protein MlaC -
  IC793_RS02330 (IC793_02330) - 477417..477704 (+) 288 WP_019457795.1 lipid asymmetry maintenance protein MlaB -
  IC793_RS02335 (IC793_02335) - 477779..478792 (-) 1014 WP_004705344.1 magnesium and cobalt transport protein CorA -
  IC793_RS02340 (IC793_02340) - 478950..479531 (+) 582 WP_004705346.1 TIGR00730 family Rossman fold protein -
  IC793_RS02345 (IC793_02345) - 479546..479944 (+) 399 WP_068932463.1 NUDIX domain-containing protein -
  IC793_RS02350 (IC793_02350) comF 479950..480585 (-) 636 WP_151683693.1 ComF family protein Machinery gene
  IC793_RS02355 (IC793_02355) recG 480578..482623 (-) 2046 WP_039253566.1 ATP-dependent DNA helicase RecG -
  IC793_RS02360 (IC793_02360) - 482644..483471 (+) 828 WP_019457791.1 NAD-dependent epimerase/dehydratase family protein -
  IC793_RS02365 (IC793_02365) - 483539..484525 (+) 987 WP_039253617.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24546.92 Da        Isoelectric Point: 10.0802

>NTDB_id=483275 IC793_RS02350 WP_151683693.1 479950..480585(-) (comF) [Acinetobacter seifertii strain AS70]
MFKLFNPQYLFQLLSPCLLCEIGTRGKHSLCKECWEQLPWLKQTVQRNDLSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEILQQLKFPKVQAIVPMPISRERLTERGFNQSLLLAKLLSKQLRIPVWQPVQRLNERSQKGLSRLERFKNIEQQFVAI
TQEKRRYRRVLIIDDVITTGSSISALSLVLKQLGCTCIYASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=483275 IC793_RS02350 WP_151683693.1 479950..480585(-) (comF) [Acinetobacter seifertii strain AS70]
ATGTTTAAGTTGTTCAATCCTCAATATCTTTTTCAGTTATTGTCCCCTTGCCTGTTATGTGAAATAGGAACGCGGGGTAA
GCACTCGCTTTGTAAAGAATGTTGGGAACAACTGCCATGGCTTAAGCAGACAGTTCAGCGTAATGATCTATCTGTTCTTG
TGGCCTGTCATTATGCCTATCCAATAAACCGCATAATTCAGCAGTTTAAATATGAACAGAAATTACATTACCAAACCCTA
CTTGCTGAAATTTTACAGCAATTAAAATTTCCTAAGGTACAAGCCATAGTACCTATGCCTATTTCTAGAGAGCGTTTAAC
GGAGCGAGGTTTTAATCAATCCTTATTACTTGCCAAGCTTCTAAGTAAACAATTAAGAATACCCGTTTGGCAGCCTGTCC
AACGCCTCAATGAGCGTTCACAAAAAGGATTATCTCGTCTCGAAAGATTTAAAAATATTGAACAGCAATTTGTTGCGATA
ACTCAAGAAAAACGGCGCTACCGTCGTGTGCTGATTATTGATGATGTGATCACAACAGGAAGTTCAATTTCCGCTTTAAG
TCTGGTGCTAAAACAGCTAGGGTGCACATGTATTTATGCAAGCTGCCTAGCTGCTGCCTCATCTACATCATATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2PSG8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

90.995

100

0.91
  comF Acinetobacter baumannii D1279779

90.047

100

0.9