Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   IC796_RS10705 Genome accession   NZ_CP061561
Coordinates   2201861..2202241 (-) Length   126 a.a.
NCBI ID   WP_019458993.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS73     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2196861..2207241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC796_RS10675 (IC796_10670) tadA 2196981..2197483 (-) 503 Protein_2103 tRNA adenosine(34) deaminase TadA -
  IC796_RS10680 (IC796_10675) - 2197491..2198615 (-) 1125 WP_151685288.1 enoyl-CoA hydratase/isomerase family protein -
  IC796_RS10685 (IC796_10680) ung 2198612..2199325 (-) 714 WP_151685286.1 uracil-DNA glycosylase -
  IC796_RS10690 (IC796_10685) - 2199376..2199972 (-) 597 WP_039251397.1 6-pyruvoyl trahydropterin synthase family protein -
  IC796_RS10695 (IC796_10690) gspK 2200202..2201160 (-) 959 Protein_2107 type II secretion system minor pseudopilin GspK -
  IC796_RS10700 (IC796_10695) xcpW 2201160..2201861 (-) 702 WP_151685282.1 type II secretion system minor pseudopilin GspJ Machinery gene
  IC796_RS10705 (IC796_10700) xcpV 2201861..2202241 (-) 381 WP_019458993.1 type II secretion system minor pseudopilin GspI Machinery gene
  IC796_RS10710 (IC796_10705) - 2202231..2202782 (-) 552 WP_004701984.1 type II secretion system protein -
  IC796_RS10715 (IC796_10710) - 2202792..2203400 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  IC796_RS10720 (IC796_10715) - 2203438..2204211 (-) 774 WP_151742451.1 TatD family hydrolase -
  IC796_RS10725 (IC796_10720) - 2204229..2204570 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  IC796_RS10730 (IC796_10725) - 2204583..2205563 (-) 981 WP_151685278.1 DNA polymerase III subunit delta' -
  IC796_RS10735 (IC796_10730) kdsB 2205575..2206336 (-) 762 WP_039251406.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13976.19 Da        Isoelectric Point: 9.4463

>NTDB_id=483205 IC796_RS10705 WP_019458993.1 2201861..2202241(-) (xcpV) [Acinetobacter seifertii strain AS73]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKIDVQISLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=483205 IC796_RS10705 WP_019458993.1 2201861..2202241(-) (xcpV) [Acinetobacter seifertii strain AS73]
ATGAAATCTAAAGGCTTTACCCTATTAGAGGTTATGGTAGCTCTTGCAATCTTTGCAGTAGCAGCTGTCGCTTTAACTAA
AGTGGCTATGCAGTACACACAGTCTACTTCTAATGCGATTTTACGAACTAAAGCTCAATTTGTAGCAATGAATGAAATTG
CTATGATGGAGATTAACCAAGAGTGGTTGCAGGGTACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAGACTTGGCAGATT
GATAAATCAGCTGAATCGACTGTTAGCCCTAATGTTCAAAAAATTGATGTACAAATCAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACGCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

96.032

100

0.96