Detailed information NTG0483182

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IC797_RS16750
• Genome accession: NZ_CP061556
• Coordinates: 3536269..3537129 (+)
• Length: 286 a.a.
• NCBI ID: WP_191028695.1
• Uniprot ID: -
• Organism: Acinetobacter seifertii strain AS74
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3531269..3542129

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IC797_RS16730 (IC797_16730)	secG	3531878..3532207 (-)	330	WP_002156913.1	preprotein translocase subunit SecG	-
IC797_RS16735 (IC797_16735)	tpiA	3532220..3533014 (-)	795	WP_191012504.1	triose-phosphate isomerase	-
IC797_RS16740 (IC797_16740)	pilB	3533304..3535016 (+)	1713	WP_151740588.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IC797_RS16745 (IC797_16745)	-	3535044..3536269 (+)	1226	Protein_3290	type II secretion system F family protein	-
IC797_RS16750 (IC797_16750)	pilD	3536269..3537129 (+)	861	WP_191028695.1	A24 family peptidase	Machinery gene
IC797_RS16755 (IC797_16755)	coaE	3537131..3537727 (+)	597	WP_191105728.1	dephospho-CoA kinase	-
IC797_RS16760 (IC797_16760)	-	3537724..3538638 (-)	915	WP_049064242.1	DMT family transporter	-
IC797_RS16765 (IC797_16765)	rlmB	3538674..3539423 (-)	750	WP_191105729.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
IC797_RS16770 (IC797_16770)	-	3539526..3539852 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
IC797_RS21190	-	3539971..3540364 (-)	394	Protein_3296	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32178.61 Da
• Isoelectric Point: 7.1038

>NTDB_id=483182 IC797_RS16750 WP_191028695.1 3536269..3537129(+) (pilD) [Acinetobacter seifertii strain AS74]
MQDIIAYFIQNLTALYVAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPNCHQP
IRWYQNIPIVSWLMLRGKCGYCQHPISIRYPAIELLTMLCSVVVVMVFGPTIQMLWGLILTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPSSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNENQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=483182 IC797_RS16750 WP_191028695.1 3536269..3537129(+) (pilD) [Acinetobacter seifertii strain AS74]
ATGCAAGATATTATTGCTTATTTTATTCAAAACCTAACTGCACTTTATGTTGCAGTTGCACTCGTGAGCCTATGTATTGG
TAGCTTTCTGAATGTAGTGATTTATCGGACTCCAAAAATGATGGAGCAAGACTGGCAGCAAGAATGTCAAATGCTCCTAA
ATCCAGAGCAACCCATTATTGACCATGAAAAACTAACATTAAGCAAACCTGCTTCATCATGTCCAAATTGCCACCAACCG
ATCCGTTGGTATCAAAATATTCCTATCGTAAGCTGGTTGATGCTAAGAGGAAAATGTGGTTATTGCCAACATCCTATCAG
CATTCGTTATCCAGCAATTGAACTACTCACCATGCTATGCTCTGTGGTAGTGGTTATGGTATTTGGCCCAACTATACAAA
TGCTTTGGGGACTCATTCTTACTTGGGTACTGATTGCCCTTACCTTTATTGATTTCGATACGCAGTTATTACCTGATCGC
TTTACCCTGCCTTTGGCTGCACTCGGCTTAGGAATTAACACCTTTAATATTTACACCTCACCTAGCTCAGCCATTTGGGG
ATATTTAATTGGTTTTTTATGTCTCTGGATTGTCTATTACTTATTTAAAGTGATTACTGGCAAAGAAGGTATGGGCTACG
GTGACTTTAAATTGCTTGCCGCATTGGGCGCATGGATGGGGCCATTGATGCTGCCATTAATTGTGTTATTGTCATCTTTA
TTGGGTGCAATTATTGGCATCATTTTATTAAAGTTAAGAAATGAAAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAGATTTATTTAGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	95.804	100	0.958
pilD	Acinetobacter baumannii D1279779	95.105	100	0.951
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	48.864	92.308	0.451