Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   IC798_RS17295 Genome accession   NZ_CP061551
Coordinates   3657830..3659251 (+) Length   473 a.a.
NCBI ID   WP_191107121.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS78     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3652830..3664251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC798_RS17275 (IC798_17275) thrC 3653083..3654222 (+) 1140 WP_191107120.1 threonine synthase -
  IC798_RS17280 (IC798_17280) pbpG 3654333..3655379 (-) 1047 WP_134263468.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  IC798_RS17285 (IC798_17285) - 3655591..3656226 (+) 636 WP_019457005.1 response regulator -
  IC798_RS17290 (IC798_17290) pilS 3656237..3657805 (+) 1569 WP_307878483.1 PAS domain-containing sensor histidine kinase Regulator
  IC798_RS17295 (IC798_17295) pilR 3657830..3659251 (+) 1422 WP_191107121.1 sigma-54 dependent transcriptional regulator Regulator
  IC798_RS17300 (IC798_17300) - 3659255..3660439 (-) 1185 WP_039254236.1 S41 family peptidase -
  IC798_RS17305 (IC798_17305) gpmI 3660455..3662002 (-) 1548 WP_191107122.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  IC798_RS17310 (IC798_17310) lptG 3662128..3663198 (-) 1071 WP_004699266.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53181.37 Da        Isoelectric Point: 6.5064

>NTDB_id=483141 IC798_RS17295 WP_191107121.1 3657830..3659251(+) (pilR) [Acinetobacter seifertii strain AS78]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLDLVKHVSQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVNKPINQVHLDQLLQKALNRQQTDQDFAETALENKLLIGRSLPIQQLRIAIKKIARS
QAPVFVTGESGAGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPLGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLMLPPLRERGEDVLL
LANHFIQKICMEWETPPKQLSDAAETYLLQQHFPGNVRELRNMIERAITLSDDAQIDVPHLHPAPLRANISSSVPLVSQT
IQNNVTTPQVVKKLPTEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=483141 IC798_RS17295 WP_191107121.1 3657830..3659251(+) (pilR) [Acinetobacter seifertii strain AS78]
ATGGCAGAACAGCAACCACTGGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACTCAGTTTCATTACGACGCATGCT
TAACCGATTTAAATCTACCTGATGGTAGCGGGTTAGACTTAGTCAAACATGTCTCTCAAAACTACCCCAACACCCCAATT
GCAGTTTTAACTGCATACGGCAATATGGATATTGCAATTGCTGCATTAAAAGCAGGTGCTTTTGATTTTGTGAATAAACC
TATTAACCAAGTCCATTTAGATCAGTTATTGCAAAAGGCGCTCAATCGGCAACAAACAGATCAAGACTTTGCAGAAACGG
CGCTAGAAAATAAATTATTAATCGGTCGTTCTCTACCCATTCAACAATTACGTATTGCAATTAAAAAAATTGCTCGCTCT
CAAGCACCTGTATTTGTTACGGGTGAGTCAGGAGCAGGTAAAGAAGTAGTTGCCAACCTAGTTCATCGGTTGAGTAACCG
TAGTGAAGGTCCTTTTATTGCAATTAACTGCGGTGCCATTCCAACTGAACTCATGGAAAGTGAGCTGTTTGGACATAAAA
AAGGCAGTTTTACTGGGGCAACTCAAGATAAACAGGGTCTGATTTTATCGGCTCACGGCGGTAGTTTATTTTTAGATGAA
ATTGCCGAATTACCACTCAGTATGCAAGTCAAACTACTGCGTGCGGTACAGGAAAAAAAGATCCGTCCTCTCGGTTCCGA
TCAGGAAATTGATGTTGATTTCCGTGTCATTAGTGCGAGTCATCAAGACTTGGATTTATTGGTTAGACAAGGCAAATTCC
GTCAGGATTTGTTTTTCCGTATCCATGTTATGGATTTGATGTTACCACCGCTACGAGAACGTGGCGAAGATGTCCTTTTA
CTTGCAAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACACCACCCAAACAATTAAGCGATGCAGCCGAGACTTA
TCTCTTACAGCAACACTTTCCTGGCAATGTTCGTGAATTAAGAAACATGATTGAGCGAGCAATCACCCTAAGTGACGATG
CTCAAATTGATGTACCACACTTACATCCAGCACCATTAAGAGCAAATATCTCTAGCTCAGTACCATTGGTGTCTCAGACT
ATACAAAATAACGTGACAACGCCTCAAGTTGTAAAAAAATTGCCAACTGAAGGATTGGAGCGTTATTTAGAGAATATTGA
AAAAGACATTCTGCTCAATGCACTCAATATGACCCATTGGAACAGAACTTTAGCAGCGAAAAAACTAGGAATGACGTTTC
GTTCTTTACGTTATCGTTTGAAAAAATTTGGCTTAGACACAGAGACTGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

93.235

100

0.932
  pilR Pseudomonas aeruginosa PAK

50.327

97.04

0.488