Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IC798_RS02050 Genome accession   NZ_CP061551
Coordinates   436460..437095 (-) Length   211 a.a.
NCBI ID   WP_191107380.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS78     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 431460..442095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC798_RS02015 (IC798_02015) mlaE 431789..432565 (+) 777 WP_004705340.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  IC798_RS02020 (IC798_02020) - 432565..433248 (+) 684 WP_191107378.1 outer membrane lipid asymmetry maintenance protein MlaD -
  IC798_RS02025 (IC798_02025) - 433275..433916 (+) 642 WP_019457796.1 phospholipid-binding protein MlaC -
  IC798_RS02030 (IC798_02030) - 433928..434215 (+) 288 WP_191107379.1 lipid asymmetry maintenance protein MlaB -
  IC798_RS02035 (IC798_02035) - 434290..435303 (-) 1014 WP_004705344.1 magnesium and cobalt transport protein CorA -
  IC798_RS02040 (IC798_02040) - 435460..436041 (+) 582 WP_004705346.1 TIGR00730 family Rossman fold protein -
  IC798_RS02045 (IC798_02045) - 436056..436454 (+) 399 WP_068932463.1 NUDIX domain-containing protein -
  IC798_RS02050 (IC798_02050) comF 436460..437095 (-) 636 WP_191107380.1 ComF family protein Machinery gene
  IC798_RS02055 (IC798_02055) recG 437088..439133 (-) 2046 WP_191107381.1 ATP-dependent DNA helicase RecG -
  IC798_RS02060 (IC798_02060) - 439154..439981 (+) 828 WP_019457791.1 NAD-dependent epimerase/dehydratase family protein -
  IC798_RS02065 (IC798_02065) - 440049..441035 (+) 987 WP_191107984.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24503.79 Da        Isoelectric Point: 9.9679

>NTDB_id=483117 IC798_RS02050 WP_191107380.1 436460..437095(-) (comF) [Acinetobacter seifertii strain AS78]
MFKLFNPQYLFQLLSPCLLCEIGTRGKHSLCKECWEQLPWLKQTVQRNDLSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEILQQIKFPKVQAIVPMPISKERLTERGFNQSLLLAKLLSKQLRIPVWQPVQRLNERSQKGLSRLERFENIEQQFVAI
TQEKRRYRRVLIIDDVITTGSSISALSLVLKQLGCTSIYASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=483117 IC798_RS02050 WP_191107380.1 436460..437095(-) (comF) [Acinetobacter seifertii strain AS78]
ATGTTTAAGTTGTTCAATCCTCAATATCTTTTTCAGTTATTGTCCCCTTGCCTGTTATGTGAAATAGGAACGCGGGGTAA
GCACTCGCTTTGTAAAGAATGTTGGGAACAACTACCATGGCTTAAGCAGACAGTTCAGCGTAATGATCTATCTGTTCTTG
TGGCCTGTCATTATGCCTATCCAATTAACCGCATAATTCAGCAGTTTAAATATGAACAGAAATTACATTACCAAACCCTA
CTTGCTGAAATTTTACAGCAAATAAAATTTCCTAAAGTACAAGCCATAGTACCTATGCCTATTTCTAAGGAGCGTTTAAC
TGAACGAGGTTTTAATCAATCCTTATTACTTGCCAAGCTTCTAAGTAAACAATTAAGAATACCCGTTTGGCAGCCTGTCC
AACGCCTCAATGAGCGTTCACAAAAAGGATTATCTCGACTCGAAAGGTTTGAAAATATTGAACAGCAATTTGTTGCGATA
ACTCAAGAAAAACGGCGCTACCGTCGTGTGCTGATTATTGATGATGTGATCACAACAGGAAGTTCAATTTCCGCTTTAAG
TCTGGTGCTAAAACAGCTAGGGTGCACCTCTATTTATGCAAGCTGCCTAGCTGCTGCATCATCTACATCATATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

91.943

100

0.919
  comF Acinetobacter baumannii D1279779

90.995

100

0.91