Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   IC799_RS12235 Genome accession   NZ_CP061550
Coordinates   2631749..2632456 (+) Length   235 a.a.
NCBI ID   WP_004702771.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS79     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2626749..2637456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC799_RS12220 (IC799_12215) - 2629566..2630372 (+) 807 WP_191028488.1 M23 family metallopeptidase -
  IC799_RS12225 (IC799_12220) - 2630369..2630794 (-) 426 WP_151741671.1 GNAT family N-acetyltransferase -
  IC799_RS12230 (IC799_12225) - 2630887..2631309 (-) 423 WP_039253874.1 OsmC family protein -
  IC799_RS12235 (IC799_12230) crp 2631749..2632456 (+) 708 WP_004702771.1 cAMP-activated global transcriptional regulator CRP Regulator
  IC799_RS12240 (IC799_12235) - 2632616..2633665 (+) 1050 WP_086496975.1 NADP(H)-dependent aldo-keto reductase -
  IC799_RS12245 (IC799_12240) - 2633721..2634500 (-) 780 WP_019458152.1 M48 family metallopeptidase -
  IC799_RS12250 (IC799_12245) - 2634618..2634935 (-) 318 WP_004702777.1 hypothetical protein -
  IC799_RS12255 (IC799_12250) - 2635062..2636381 (-) 1320 WP_004702779.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26540.12 Da        Isoelectric Point: 4.6625

>NTDB_id=483089 IC799_RS12235 WP_004702771.1 2631749..2632456(+) (crp) [Acinetobacter seifertii strain AS79]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEENSVTDEDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=483089 IC799_RS12235 WP_004702771.1 2631749..2632456(+) (crp) [Acinetobacter seifertii strain AS79]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
GCGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAATCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTGCGTGAAGACGACGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTCCGTACTCGTGATGTTTGTGAAATTGCAGA
AATTTCATATGACAACTTCCACGAACTGAGCAAGCAGTATCCAGATCTTAGCTACGCTGTTTTTGCGCAACTTGTTCGTC
GCTTAAAAAATACAACTCGCAAAATGACTGACCTTGCGTTCATTGACGTATCTGGTCGTATTGCTCGTTGCTTAATCGAC
TTATCTTCACAGCCAGAAGCAATGATCTTGCCGAATGGTCGTCAGATTCGTATCACTCGCCAAGAAATTGGACGTATTGT
TGGATGTTCACGCGAGATGGTTGGTCGTGTATTGAAGACTTTAGAAGATCAAGGCATGATCCAAACTGATGGTAAAGCCA
TTCTCATTTTTGATGCTTCATTAGAAGAAAATTCAGTCACTGATGAAGACTATGATGATGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

98.298

100

0.983
  crp Vibrio cholerae strain A1552

47.087

87.66

0.413
  crp Haemophilus influenzae Rd KW20

48.718

82.979

0.404