Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IC799_RS02055 Genome accession   NZ_CP061550
Coordinates   441321..441956 (-) Length   211 a.a.
NCBI ID   WP_191028835.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS79     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 436321..446956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC799_RS02020 (IC799_02020) mlaE 436650..437426 (+) 777 WP_004705340.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  IC799_RS02025 (IC799_02025) - 437426..438109 (+) 684 WP_019457797.1 outer membrane lipid asymmetry maintenance protein MlaD -
  IC799_RS02030 (IC799_02030) - 438136..438777 (+) 642 WP_039253560.1 phospholipid-binding protein MlaC -
  IC799_RS02035 (IC799_02035) - 438789..439076 (+) 288 WP_019457795.1 lipid asymmetry maintenance protein MlaB -
  IC799_RS02040 (IC799_02040) - 439150..440163 (-) 1014 WP_004705344.1 magnesium and cobalt transport protein CorA -
  IC799_RS02045 (IC799_02045) - 440321..440902 (+) 582 WP_004705346.1 TIGR00730 family Rossman fold protein -
  IC799_RS02050 (IC799_02050) - 440917..441315 (+) 399 WP_068932463.1 NUDIX hydrolase -
  IC799_RS02055 (IC799_02055) comF 441321..441956 (-) 636 WP_191028835.1 ComF family protein Machinery gene
  IC799_RS02060 (IC799_02060) recG 441949..443994 (-) 2046 WP_039253566.1 ATP-dependent DNA helicase RecG -
  IC799_RS02065 (IC799_02065) - 444015..444842 (+) 828 WP_019457791.1 NAD-dependent epimerase/dehydratase family protein -
  IC799_RS02070 (IC799_02070) - 444910..445896 (+) 987 WP_174738875.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24472.78 Da        Isoelectric Point: 10.0779

>NTDB_id=483077 IC799_RS02055 WP_191028835.1 441321..441956(-) (comF) [Acinetobacter seifertii strain AS79]
MFKLFNPQYLFQLLSPCLLCEIGTRGKHSLCKECWEQLPWLKQAVQRNDLSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEILQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLAKLLSKQLRIPVWQPVQRLNERSQKGLSRLERFENIEQQFVAI
TQEKRRYRRVLIIDDVITTGSSISALSLVLKQLGCTSIYASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=483077 IC799_RS02055 WP_191028835.1 441321..441956(-) (comF) [Acinetobacter seifertii strain AS79]
ATGTTTAAGTTGTTCAATCCTCAATATCTTTTTCAGTTATTGTCCCCTTGCCTGTTATGTGAAATAGGAACGCGGGGTAA
GCACTCGCTTTGTAAAGAATGTTGGGAACAACTACCATGGCTTAAGCAGGCAGTTCAGCGTAATGATCTATCTGTTCTTG
TGGCCTGTCATTATGCCTATCCAATTAACCGCATAATTCAGCAGTTTAAATATGAACAGAAATTACATTACCAAACCCTA
CTTGCTGAAATTTTACAGCAATTAAAATTTCCTAAGGTACAAGCCATAGTACCTATGCCTATTTCTAAACAGCGTTTAAC
GGAGCGAGGTTTTAATCAATCATTATTACTTGCCAAGCTTCTAAGTAAACAATTAAGAATACCCGTTTGGCAGCCTGTCC
AACGCCTCAATGAGCGTTCACAAAAAGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGATA
ACTCAAGAAAAACGGCGCTACCGTCGTGTGCTGATTATTGATGATGTGATCACAACAGGAAGTTCAATTTCCGCTTTAAG
TCTAGTGCTAAAACAGCTAGGGTGCACATCTATTTATGCAAGCTGCCTAGCTGCTGCCTCATCTACATCATATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

92.417

100

0.924
  comF Acinetobacter baumannii D1279779

91.469

100

0.915