Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   IC799_RS01705 Genome accession   NZ_CP061550
Coordinates   367937..368419 (+) Length   160 a.a.
NCBI ID   WP_191012230.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS79     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 362937..373419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC799_RS01700 (IC799_01700) pilY1 363740..367924 (+) 4185 WP_191012231.1 PilC/PilY family type IV pilus protein Machinery gene
  IC799_RS01705 (IC799_01705) pilY2 367937..368419 (+) 483 WP_191012230.1 type IV pilin protein Machinery gene
  IC799_RS01710 (IC799_01710) pilE 368416..368841 (+) 426 WP_174743602.1 type IV pilin protein Machinery gene
  IC799_RS01715 (IC799_01715) rpsP 368988..369239 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  IC799_RS01720 (IC799_01720) rimM 369259..369807 (+) 549 WP_004705239.1 ribosome maturation factor RimM -
  IC799_RS01725 (IC799_01725) trmD 369853..370608 (+) 756 WP_151682763.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  IC799_RS01730 (IC799_01730) rplS 370828..371196 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  IC799_RS01735 (IC799_01735) - 371254..372195 (-) 942 WP_081409789.1 lipase family alpha/beta hydrolase -
  IC799_RS01740 (IC799_01740) - 372316..373350 (-) 1035 WP_191012229.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17558.82 Da        Isoelectric Point: 9.1549

>NTDB_id=483075 IC799_RS01705 WP_191012230.1 367937..368419(+) (pilY2) [Acinetobacter seifertii strain AS79]
MSKYYNLKFNRGFTLIELMVTLLTLAILVAIAVPSYQSYARRATASAVKSEILKLAERLEQHKSRNFTYRGFTTTSVTLT
RGGYTIQITDDTTAGNLLTSSAANGQTWMIRATTTDSRNLNFIAKNSGLRCQSLTATAVDNDCGGTTTCNTCEANSESWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=483075 IC799_RS01705 WP_191012230.1 367937..368419(+) (pilY2) [Acinetobacter seifertii strain AS79]
ATGAGTAAATACTATAATTTGAAGTTCAATCGGGGTTTTACTCTGATTGAACTTATGGTCACTCTTCTTACTTTAGCTAT
TCTTGTTGCTATTGCTGTTCCTTCTTATCAAAGTTATGCCCGTAGAGCTACCGCATCTGCCGTTAAGAGTGAGATTTTAA
AATTAGCTGAGCGATTGGAGCAGCATAAGTCTAGAAATTTTACCTATAGGGGATTTACCACAACCTCTGTAACGTTAACT
CGTGGGGGGTATACGATTCAGATCACTGATGATACGACTGCTGGTAATTTATTAACGAGTTCTGCTGCGAATGGGCAGAC
ATGGATGATTAGAGCGACTACTACAGATTCCAGAAATCTTAATTTTATTGCTAAAAACTCAGGTTTACGTTGCCAGAGCT
TAACAGCTACTGCTGTTGATAATGATTGTGGTGGAACAACTACATGTAACACATGTGAAGCAAATAGTGAGAGTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

82.5

100

0.825
  comE Acinetobacter baylyi ADP1

36.628

100

0.394