Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   F750_RS23870 Genome accession   NC_021055
Coordinates   5353889..5355508 (+) Length   539 a.a.
NCBI ID   WP_014153801.1    Uniprot ID   -
Organism   Streptomyces sp. PAMC 26508     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5348889..5360508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F750_RS23835 (F750_5145) lepB 5349101..5349874 (+) 774 WP_015578915.1 signal peptidase I -
  F750_RS23840 (F750_5146) lepB 5349867..5350925 (+) 1059 WP_014153806.1 signal peptidase I -
  F750_RS23845 (F750_5147) lepB 5350843..5351724 (+) 882 WP_041667886.1 signal peptidase I -
  F750_RS23850 (F750_5148) lepB 5351774..5352547 (+) 774 WP_015578917.1 signal peptidase I -
  F750_RS23855 (F750_5149) - 5352537..5353025 (+) 489 WP_030125168.1 NUDIX hydrolase -
  F750_RS23860 (F750_5150) - 5353089..5353397 (+) 309 WP_003965949.1 DUF2469 domain-containing protein -
  F750_RS23865 (F750_5151) - 5353530..5353889 (+) 360 WP_015578919.1 YraN family protein -
  F750_RS23870 (F750_5152) comM 5353889..5355508 (+) 1620 WP_014153801.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  F750_RS23875 (F750_5153) dprA 5355505..5356689 (+) 1185 WP_015578921.1 DNA-processing protein DprA -
  F750_RS23880 (F750_5154) whiG 5356952..5357788 (+) 837 WP_014153799.1 RNA polymerase sigma factor WhiG -
  F750_RS23885 (F750_5155) - 5357886..5358443 (+) 558 WP_015578923.1 TetR/AcrR family transcriptional regulator -
  F750_RS33920 - 5358602..5359192 (-) 591 Protein_4776 peptidoglycan DD-metalloendopeptidase family protein -
  F750_RS23890 (F750_5157) rpsB 5359472..5360392 (+) 921 WP_014153797.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 539 a.a.        Molecular weight: 55496.89 Da        Isoelectric Point: 7.0443

>NTDB_id=48301 F750_RS23870 WP_014153801.1 5353889..5355508(+) (comM) [Streptomyces sp. PAMC 26508]
MGFARACSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLVESRDRVRAAVVNSGAEWPQKKLTVGLSPASVPKSGSG
FDLAVACAVLGAAERIDPAAVADVVMIGELGLDGRVRPVRGVLPAVLAAAEAGYRHVVVPEQTAGEAALVPGISVLGVRS
LRQLIAVLGDEPVPEEPDPDRGRPDTMLAGLMVPGAGLGTGLAPLADGTAHRPDLADVAGQGRARKALEVAAAGGHHLLL
SGPPGAGKTMLAERLTAILPPLSRQESLEVTAVHSVAGILPPGEPLIGAAPYCAPHHSATMQSLVGGGNGLPRPGAVSLA
HRGVLFLDEAPEFSVRALDALRQPLESGHVVVARAAGVVRLPARFLMVLAANPCPCGRHTLAGAGCECPPSAVRRYQARL
SGPLLDRVDLRVEVEPVGRADLMGSGGRGESSADVAARVREARERAAERLTGTPWTTNSEVPGHELRTRLVAAPGALMAA
ERDMERGVLTARGLDRVLRVAWTVADLRGADRPDATDVAVALELRTGIQRGVPMRAGAR

Nucleotide


Download         Length: 1620 bp        

>NTDB_id=48301 F750_RS23870 WP_014153801.1 5353889..5355508(+) (comM) [Streptomyces sp. PAMC 26508]
ATGGGGTTCGCGCGGGCGTGCTCGGTGGCCTTGGTGGGCGTCGAGGGCGTGGTGGTGGAGGTCCAGGCCGATCTGGAGCC
GGGCGTGGCGGCGTTCACGCTCGTCGGCCTCCCGGACAAGAGCCTGGTGGAGAGCCGGGACCGGGTCAGGGCCGCGGTCG
TCAATTCCGGGGCCGAGTGGCCGCAGAAGAAGCTCACGGTGGGGTTGTCGCCCGCCTCTGTGCCGAAGTCCGGCTCGGGT
TTCGATCTGGCCGTGGCGTGCGCGGTCCTCGGAGCGGCCGAGAGGATCGACCCCGCCGCCGTCGCCGATGTGGTGATGAT
CGGGGAGCTGGGCCTGGACGGCCGGGTGCGCCCGGTGCGCGGGGTGCTGCCCGCCGTACTCGCGGCGGCGGAAGCCGGGT
ACCGGCACGTCGTCGTCCCGGAGCAGACCGCGGGGGAGGCCGCGCTGGTCCCGGGCATCTCCGTGCTCGGCGTGCGGAGC
CTGCGCCAGCTGATCGCCGTCCTCGGCGACGAACCCGTCCCCGAGGAGCCGGACCCCGACCGCGGACGTCCCGACACGAT
GCTCGCCGGACTCATGGTGCCGGGCGCGGGGCTCGGCACAGGACTGGCCCCCCTGGCGGACGGCACGGCGCACCGGCCCG
ACCTGGCCGACGTCGCGGGCCAGGGCCGGGCCCGCAAGGCCCTGGAGGTGGCGGCGGCGGGCGGACACCACCTGCTGCTG
TCCGGGCCGCCGGGGGCGGGTAAGACCATGCTCGCCGAGCGGCTCACGGCGATCCTGCCGCCGCTGTCCCGGCAGGAGTC
CCTCGAAGTGACCGCAGTGCACTCCGTGGCGGGCATCCTCCCGCCGGGTGAACCCCTGATCGGCGCGGCACCGTACTGCG
CGCCGCACCACTCGGCGACGATGCAGTCGCTCGTCGGCGGGGGGAACGGTCTGCCGAGACCGGGAGCGGTGTCCCTGGCG
CACCGGGGCGTGCTCTTCCTGGACGAGGCGCCCGAGTTCTCCGTACGGGCACTGGACGCGTTGCGCCAGCCGCTGGAGTC
CGGGCACGTGGTGGTCGCGAGGGCGGCCGGGGTCGTCCGGCTGCCGGCGCGCTTCCTGATGGTCCTGGCCGCGAATCCCT
GTCCCTGCGGCAGGCACACGCTGGCCGGTGCGGGCTGCGAGTGCCCGCCGTCGGCGGTCCGCCGCTACCAGGCGCGGCTG
TCGGGCCCCCTGCTCGACCGGGTGGACCTGCGGGTAGAGGTCGAGCCCGTCGGCAGGGCGGACCTCATGGGGAGCGGCGG
GCGCGGGGAGTCCTCGGCCGACGTGGCCGCGAGGGTACGGGAAGCCAGGGAGCGGGCCGCGGAGAGGCTCACCGGCACGC
CCTGGACCACCAACAGCGAAGTGCCCGGACACGAGCTGCGTACACGGCTGGTCGCGGCGCCCGGCGCCCTGATGGCGGCG
GAGCGGGACATGGAGCGGGGTGTGCTCACGGCCCGTGGCCTGGACCGCGTCCTGCGCGTGGCGTGGACCGTGGCGGACCT
GAGGGGTGCCGACCGCCCGGACGCCACGGACGTCGCGGTCGCACTCGAACTGCGTACGGGCATCCAGCGAGGGGTCCCGA
TGCGAGCCGGTGCCCGGTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(214-419)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(429-525)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

40.304

97.588

0.393
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.9

94.805

0.388
  comM Vibrio cholerae strain A1552

40.9

94.805

0.388
  comM Haemophilus influenzae Rd KW20

39.015

97.959

0.382
  comM Acinetobacter baylyi ADP1

38.403

97.588

0.375
  comM Glaesserella parasuis strain SC1401

36.961

98.887

0.365

Multiple sequence alignment