Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PSTAA_RS18650 Genome accession   NC_017532
Coordinates   3994041..3995633 (+) Length   530 a.a.
NCBI ID   WP_013984075.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri DSM 4166     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3989041..4000633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSTAA_RS18630 (PSTAA_3735) pgeF 3990794..3991531 (-) 738 WP_014597753.1 peptidoglycan editing factor PgeF -
  PSTAA_RS18635 (PSTAA_3736) rluD 3991528..3992502 (-) 975 WP_011914661.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSTAA_RS18640 (PSTAA_3737) - 3992707..3993696 (+) 990 WP_013984073.1 outer membrane protein assembly factor BamD -
  PSTAA_RS18645 (PSTAA_3738) - 3993818..3994051 (+) 234 WP_013984074.1 PP0621 family protein -
  PSTAA_RS18650 (PSTAA_3739) pilS 3994041..3995633 (+) 1593 WP_013984075.1 sensor histidine kinase Regulator
  PSTAA_RS18655 (PSTAA_3740) pilR 3995764..3997101 (+) 1338 WP_026006503.1 sigma-54-dependent transcriptional regulator Regulator
  PSTAA_RS18660 (PSTAA_3741) - 3997145..3998203 (-) 1059 WP_011914666.1 DUF2333 family protein -
  PSTAA_RS18665 (PSTAA_3742) - 3998421..4000016 (+) 1596 WP_014597755.1 response regulator -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58892.95 Da        Isoelectric Point: 7.8561

>NTDB_id=48299 PSTAA_RS18650 WP_013984075.1 3994041..3995633(+) (pilS) [Stutzerimonas stutzeri DSM 4166]
MGTENLTFFGDQGRRILRLYHLYRLTIGLALVLLISSDLHNDLLQMSNPQLFQYGAWLYLILNIIVAVLVQSPERDLPVL
SLALMDVILLSGLFYFGGGTPSGIGNLLIVAVAIANILLRGRVGFFIAAVAATGLIYLTFYLSISRSEASSQYVQAGALG
TLCFAAAFLVQGLTRRLQVSETLARQRAEEVANLEALNALILQRMRTGIMVLDPQERVLLANQGALQLLGQESLAGERLA
PRCPELLKALQHWRGNPTLRPPNLKATPGGPTLQPSFAALQHGNKLDTLVFLEDISQIAQKAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLQESEELDGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFVSEFRQGLSPQ
QTVHLETIGSSLQTRMDPNQLTQVLTNLVQNGLRYSGKEHDRAQVWLRLFRDEASDLPVVEVLDDGPGIAAEQLHNVFEP
FFTTESKGTGLGLYISRELCESNQARLDYRERAEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=48299 PSTAA_RS18650 WP_013984075.1 3994041..3995633(+) (pilS) [Stutzerimonas stutzeri DSM 4166]
GTGGGCACTGAGAACCTCACCTTCTTCGGCGACCAGGGGCGGCGCATCCTTCGCCTGTATCACCTCTACCGCCTGACCAT
TGGCCTCGCGCTGGTGCTGCTGATCAGCAGCGACCTGCACAACGATCTGCTGCAGATGAGCAATCCGCAGCTGTTCCAGT
ACGGCGCCTGGCTCTATCTGATCCTCAACATCATCGTCGCGGTGCTGGTGCAGAGCCCCGAGCGCGACCTGCCAGTGCTC
AGCCTGGCGCTGATGGACGTGATCCTGCTGTCGGGATTGTTCTATTTTGGCGGAGGAACGCCGAGCGGCATCGGTAACCT
GCTGATCGTCGCCGTCGCCATCGCCAATATTCTCCTGCGGGGGCGGGTCGGTTTCTTCATCGCCGCGGTCGCTGCCACCG
GCCTGATCTACCTGACCTTCTACCTGAGCATCAGCCGTTCCGAAGCCAGCAGCCAGTACGTCCAGGCCGGTGCGCTCGGC
ACGCTGTGCTTCGCCGCAGCCTTTCTCGTCCAGGGACTGACTCGGCGCCTGCAGGTCAGCGAGACTCTGGCCCGCCAGCG
CGCCGAGGAGGTCGCCAACCTCGAGGCCCTCAACGCGCTGATCCTGCAGCGCATGCGCACCGGCATCATGGTGTTGGACC
CGCAGGAGCGCGTGCTCCTGGCCAACCAGGGGGCGCTGCAGTTGCTCGGCCAGGAATCGCTGGCCGGCGAGCGCCTCGCG
CCGCGCTGCCCGGAGCTGCTCAAGGCACTGCAGCACTGGCGTGGCAATCCCACACTGCGCCCGCCGAACCTCAAGGCCAC
CCCCGGCGGACCGACGCTGCAGCCGAGTTTCGCCGCCCTGCAGCACGGCAACAAGCTCGACACTCTGGTGTTCCTCGAGG
ACATCTCGCAGATCGCCCAGAAGGCCCAGCAACTCAAGCTCGCCTCCCTCGGACGACTCACAGCCAGCATTGCCCATGAA
ATCCGCAATCCGCTGGGCGCCATCAGCCATGCTGCTCAGCTGCTACAGGAATCCGAAGAGCTGGACGGCCCGGATCGGCG
ACTGGCGCAGATCATCCAGGACCACTCGCGGCGGATGAATCTGGTCATCGAGAACGTGCTGCAGCTTTCCCGGCGCCGCC
AGGCGGAGCCCCAGCTGCTGGATCTCAAATACTGGCTGCATCGCTTCGTCAGCGAGTTCCGCCAGGGGCTCAGCCCGCAG
CAGACGGTTCACCTGGAAACCATCGGCAGCTCGCTGCAGACGCGCATGGACCCCAACCAGCTGACCCAGGTGCTCACCAA
CCTGGTGCAGAACGGCCTGCGCTACAGCGGCAAGGAGCACGATCGCGCTCAGGTCTGGCTTCGCCTGTTTCGCGACGAAG
CCAGCGATCTGCCGGTCGTTGAGGTCCTCGACGATGGACCCGGCATCGCCGCCGAGCAGTTGCACAACGTTTTCGAACCC
TTCTTCACCACCGAGAGCAAAGGCACCGGGCTCGGGCTGTACATCTCCCGCGAGCTGTGCGAAAGCAACCAGGCACGCCT
GGACTACCGCGAGCGCGCCGAAGGCGGCAGCTGCTTCCGCATCGTCTTCGCGCACCCGCGCAAGCTGAGCTAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

PAS domain (PAS_8)

(202-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

66.604

100

0.666

Multiple sequence alignment