Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   J7T60_RS08635 Genome accession   NZ_CP072436
Coordinates   1646730..1647047 (-) Length   105 a.a.
NCBI ID   WP_002952035.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24735     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1641730..1652047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7T60_RS08605 (J7T60_08500) - 1642083..1642745 (-) 663 WP_011227583.1 CPBP family intramembrane glutamic endopeptidase -
  J7T60_RS08610 (J7T60_08505) - 1642848..1643141 (-) 294 WP_232085688.1 hypothetical protein -
  J7T60_RS08615 - 1643366..1643791 (-) 426 WP_111679733.1 CPBP family intramembrane glutamic endopeptidase -
  J7T60_RS08620 (J7T60_08515) - 1644034..1644231 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  J7T60_RS08625 (J7T60_08520) - 1644480..1645673 (-) 1194 WP_014608740.1 acetate kinase -
  J7T60_RS08630 (J7T60_08525) comGH 1645729..1646685 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  J7T60_RS08635 (J7T60_08530) comGG 1646730..1647047 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG Machinery gene
  J7T60_RS08640 (J7T60_08535) comGF 1647025..1647462 (-) 438 WP_372433445.1 competence type IV pilus minor pilin ComGF Machinery gene
  J7T60_RS08645 (J7T60_08540) comGE 1647446..1647739 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE Machinery gene
  J7T60_RS08650 (J7T60_08545) comGD 1647711..1648139 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  J7T60_RS08655 (J7T60_08550) comGC 1648099..1648425 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  J7T60_RS08660 (J7T60_08555) comGB 1648422..1649522 (-) 1101 WP_372433576.1 competence type IV pilus assembly protein ComGB Machinery gene
  J7T60_RS08665 (J7T60_08560) comGA 1649404..1650345 (-) 942 WP_180478282.1 competence type IV pilus ATPase ComGA Machinery gene
  J7T60_RS08670 (J7T60_08565) - 1650426..1650788 (-) 363 WP_372433446.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11824.93 Da        Isoelectric Point: 10.6334

>NTDB_id=482923 J7T60_RS08635 WP_002952035.1 1646730..1647047(-) (comGG) [Streptococcus thermophilus strain S24735]
MLLKKQVRGGVLLYALFMAGIFTLLLQVYLERVVASSRQNQAQIVASQSRLMAEMTMDLVDKEAGAFSFSQGTTTYEVKG
KQVIVRVASKGQIKTYRYVKKQDQK

Nucleotide


Download         Length: 318 bp        

>NTDB_id=482923 J7T60_RS08635 WP_002952035.1 1646730..1647047(-) (comGG) [Streptococcus thermophilus strain S24735]
ATGCTTTTGAAAAAACAGGTTAGGGGAGGCGTTCTTCTCTACGCTCTTTTTATGGCTGGCATTTTTACACTCCTTCTTCA
GGTTTATCTGGAACGGGTGGTAGCTAGCTCTAGACAAAACCAAGCGCAAATAGTGGCCAGTCAAAGCCGTCTCATGGCAG
AGATGACTATGGACTTGGTGGATAAGGAAGCAGGTGCTTTTAGTTTTTCTCAGGGGACTACGACTTACGAAGTTAAGGGT
AAGCAAGTGATTGTCAGAGTTGCCAGTAAAGGCCAAATCAAGACCTATCGTTATGTGAAGAAACAAGATCAGAAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

45.455

94.286

0.429
  comGG Streptococcus mutans UA159

45.455

94.286

0.429
  comGG/cglG Streptococcus pneumoniae Rx1

42.222

85.714

0.362
  comGG/cglG Streptococcus pneumoniae D39

42.222

85.714

0.362
  comGG/cglG Streptococcus pneumoniae R6

42.222

85.714

0.362
  comGG/cglG Streptococcus pneumoniae TIGR4

42.222

85.714

0.362