Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   J7U23_RS06870 Genome accession   NZ_CP072435
Coordinates   1325592..1326236 (-) Length   214 a.a.
NCBI ID   WP_002951384.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24736     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1320592..1331236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U23_RS06845 (J7U23_06785) - 1322691..1323689 (-) 999 WP_372589865.1 NAD(P)/FAD-dependent oxidoreductase -
  J7U23_RS06850 (J7U23_06790) trmD 1323691..1324410 (-) 720 WP_179970957.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  J7U23_RS06855 (J7U23_06795) rimM 1324400..1324918 (-) 519 WP_011226286.1 ribosome maturation factor RimM -
  J7U23_RS06870 (J7U23_06810) vraR 1325592..1326236 (-) 645 WP_002951384.1 response regulator transcription factor Regulator
  J7U23_RS06875 (J7U23_06815) - 1326226..1327236 (-) 1011 WP_011226288.1 sensor histidine kinase -
  J7U23_RS06880 (J7U23_06820) liaF 1327233..1327931 (-) 699 WP_179970958.1 cell wall-active antibiotics response protein LiaF -
  J7U23_RS06885 - 1328197..1328352 (-) 156 WP_011226290.1 ion channel -
  J7U23_RS06890 (J7U23_06830) stkP/pknB 1328989..1330860 (-) 1872 WP_372589866.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24048.39 Da        Isoelectric Point: 4.5864

>NTDB_id=482789 J7U23_RS06870 WP_002951384.1 1325592..1326236(-) (vraR) [Streptococcus thermophilus strain S24736]
MSNKINVILVDDHEMVRLGLKSFLNLQGDVEVVGEAENGREGVDLALELRPDVVVMDLVMPELDGVQATLELLKEWPEAK
ILVLTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNSIRKVYRGEEAIETEVDNKIKYHDSHPNLHDDLTARERDILALL
AKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLVSQDDE

Nucleotide


Download         Length: 645 bp        

>NTDB_id=482789 J7U23_RS06870 WP_002951384.1 1325592..1326236(-) (vraR) [Streptococcus thermophilus strain S24736]
ATGTCGAATAAGATTAATGTAATTTTGGTAGATGATCATGAAATGGTTCGTTTAGGCCTTAAGAGTTTCTTGAATCTCCA
AGGAGATGTAGAAGTGGTTGGAGAGGCAGAAAACGGCCGTGAGGGTGTCGATCTTGCCCTGGAGCTACGACCAGATGTCG
TTGTTATGGACCTTGTTATGCCTGAGCTAGATGGTGTTCAGGCGACTTTGGAATTGCTAAAAGAATGGCCTGAAGCTAAG
ATTCTAGTTTTGACCAGCTATTTGGACAATGAAAAAATTTATCCAGTCATTGAAGCTGGCGCCAAAGGCTATATGCTTAA
AACGAGCAGTGCAGCAGAGATTCTAAATAGTATCCGTAAGGTTTACCGTGGAGAGGAAGCTATCGAAACTGAGGTAGACA
ATAAGATTAAATACCATGATAGTCACCCGAACTTACATGATGACTTGACCGCGCGCGAACGTGATATCTTAGCCCTCCTA
GCTAAAGGCTATGACAATCAAACCATTGCTAACGAACTTTTTATTTCTTTAAAAACCGTCAAGACTCATGTGTCTAATAT
CCTTGGGAAATTAAATGTTGATGACCGTACTCAGGCTGTAGTTTATGCCTTTAGACATCATCTGGTTTCACAGGATGATG
AATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

50.485

96.262

0.486
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.379