Detailed information NTG0482225

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: J7U22_RS09585
• Genome accession: NZ_CP072428
• Coordinates: 1821893..1822993 (+)
• Length: 366 a.a.
• NCBI ID: WP_002947786.1
• Uniprot ID: Q5LXI7
• Organism: Streptococcus thermophilus strain S24749
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1816893..1827993

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J7U22_RS09560 (J7U22_09555)	pgsA	1817436..1817978 (-)	543	WP_002947777.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
J7U22_RS09565 (J7U22_09560)	-	1817991..1818848 (-)	858	WP_372588825.1	helix-turn-helix domain-containing protein	-
J7U22_RS09570 (J7U22_09565)	yfmH	1818907..1820184 (-)	1278	WP_011226704.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
J7U22_RS09575 (J7U22_09570)	yfmF	1820186..1821435 (-)	1250	Protein_1828	EF-P 5-aminopentanol modification-associated protein YfmF	-
J7U22_RS09580 (J7U22_09575)	yaaA	1821513..1821890 (+)	378	WP_002947785.1	S4 domain-containing protein YaaA	-
J7U22_RS09585 (J7U22_09580)	recF	1821893..1822993 (+)	1101	WP_002947786.1	DNA replication/repair protein RecF	Machinery gene
J7U22_RS09590 (J7U22_09585)	guaB	1823162..1824643 (-)	1482	WP_014608806.1	IMP dehydrogenase	-
J7U22_RS09595 (J7U22_09590)	trpS	1824820..1825842 (-)	1023	WP_002952292.1	tryptophan--tRNA ligase	-
J7U22_RS09600 (J7U22_09595)	-	1826270..1827142 (+)	873	WP_011227628.1	YitT family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42173.29 Da
• Isoelectric Point: 8.3913

>NTDB_id=482225 J7U22_RS09585 WP_002947786.1 1821893..1822993(+) (recF) [Streptococcus thermophilus strain S24749]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=482225 J7U22_RS09585 WP_002947786.1 1821893..1822993(+) (recF) [Streptococcus thermophilus strain S24749]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCACCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACAGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACGACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q5LXI7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432