Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   J7U22_RS08890 Genome accession   NZ_CP072428
Coordinates   1699269..1699586 (-) Length   105 a.a.
NCBI ID   WP_011681685.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24749     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1694269..1704586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U22_RS08860 (J7U22_08840) - 1694627..1695289 (-) 663 WP_014727719.1 CPBP family intramembrane glutamic endopeptidase -
  J7U22_RS08865 (J7U22_08845) - 1695386..1695829 (-) 444 WP_041829335.1 hypothetical protein -
  J7U22_RS08870 - 1695903..1696241 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  J7U22_RS08875 (J7U22_08855) - 1696573..1696770 (-) 198 WP_014727723.1 helix-turn-helix transcriptional regulator -
  J7U22_RS08880 (J7U22_08860) - 1697019..1698212 (-) 1194 WP_014608740.1 acetate kinase -
  J7U22_RS08885 (J7U22_08865) comGH 1698268..1699224 (-) 957 WP_372434691.1 class I SAM-dependent methyltransferase Machinery gene
  J7U22_RS08890 (J7U22_08870) comGG 1699269..1699586 (-) 318 WP_011681685.1 competence type IV pilus minor pilin ComGG Machinery gene
  J7U22_RS08895 (J7U22_08875) comGF 1699564..1700001 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  J7U22_RS08900 (J7U22_08880) comGE 1699985..1700278 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE Machinery gene
  J7U22_RS08905 (J7U22_08885) comGD 1700250..1700678 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  J7U22_RS08910 (J7U22_08890) comGC 1700638..1700964 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  J7U22_RS08915 (J7U22_08895) comGB 1700961..1702060 (-) 1100 Protein_1699 competence type IV pilus assembly protein ComGB -
  J7U22_RS08920 (J7U22_08900) comGA/cglA/cilD 1701942..1702883 (-) 942 WP_071417491.1 competence type IV pilus ATPase ComGA Machinery gene
  J7U22_RS08925 (J7U22_08905) - 1702964..1703326 (-) 363 WP_014622006.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11851.01 Da        Isoelectric Point: 10.6334

>NTDB_id=482217 J7U22_RS08890 WP_011681685.1 1699269..1699586(-) (comGG) [Streptococcus thermophilus strain S24749]
MLLKKQVRGGVLLYALFMAGIFILLLQVYLERVVASSRQNQAQIVASQSRLMAEMTMDLVDKEAGAFSFSQGTTTYEVKG
KQVVVRVVSKGQIKTYRYVKKQDQK

Nucleotide


Download         Length: 318 bp        

>NTDB_id=482217 J7U22_RS08890 WP_011681685.1 1699269..1699586(-) (comGG) [Streptococcus thermophilus strain S24749]
ATGCTTTTGAAAAAACAGGTTAGGGGAGGCGTTCTTCTCTACGCTCTTTTTATGGCTGGCATTTTTATACTCCTTCTTCA
GGTTTATCTGGAACGGGTGGTAGCTAGCTCTAGACAAAACCAAGCGCAAATAGTGGCCAGTCAAAGCCGTCTCATGGCAG
AGATGACTATGGACTTGGTGGATAAGGAAGCAGGTGCTTTTAGTTTTTCTCAGGGGACTACGACTTACGAGGTTAAGGGT
AAGCAAGTGGTTGTCAGAGTTGTCAGTAAAGGCCAAATCAAGACCTATCGTTATGTGAAGAAACAAGATCAGAAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

45.455

94.286

0.429
  comGG Streptococcus mutans UA159

45.455

94.286

0.429
  comGG/cglG Streptococcus pneumoniae Rx1

43.333

85.714

0.371
  comGG/cglG Streptococcus pneumoniae TIGR4

43.333

85.714

0.371
  comGG/cglG Streptococcus pneumoniae D39

43.333

85.714

0.371
  comGG/cglG Streptococcus pneumoniae R6

43.333

85.714

0.371
  comGG/cglG Streptococcus mitis NCTC 12261

42.222

85.714

0.362