Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   IC757_RS05825 Genome accession   NZ_CP061368
Coordinates   1340495..1341910 (-) Length   471 a.a.
NCBI ID   WP_190976427.1    Uniprot ID   A0A7H4GQJ5
Organism   Wenzhouxiangella sp. AB-CW3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1337755..1346284 1340495..1341910 within 0


Gene organization within MGE regions


Location: 1337755..1346284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC757_RS05815 (IC757_05815) - 1337755..1339128 (-) 1374 WP_190976425.1 aromatic amino acid lyase -
  IC757_RS05820 (IC757_05820) - 1339134..1340453 (-) 1320 WP_223846270.1 hypothetical protein -
  IC757_RS05825 (IC757_05825) pilR 1340495..1341910 (-) 1416 WP_190976427.1 sigma-54-dependent transcriptional regulator Regulator
  IC757_RS05830 (IC757_05830) - 1341967..1343619 (-) 1653 WP_190976428.1 two-component system sensor histidine kinase NtrB -
  IC757_RS05835 (IC757_05835) sucC 1343832..1344995 (+) 1164 WP_190976429.1 ADP-forming succinate--CoA ligase subunit beta -
  IC757_RS05840 (IC757_05840) sucD 1345007..1345879 (+) 873 WP_190976430.1 succinate--CoA ligase subunit alpha -
  IC757_RS05845 (IC757_05845) - 1345907..1346284 (+) 378 WP_190976431.1 four helix bundle protein -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 52857.16 Da        Isoelectric Point: 4.8724

>NTDB_id=482127 IC757_RS05825 WP_190976427.1 1340495..1341910(-) (pilR) [Wenzhouxiangella sp. AB-CW3]
MTEMRALVVDDEPDLRELLDITLSRMGLEVDTAENLAEARHYLSANADYALCLTDMRLPDGNGLTLIKEINRDHDQLPVA
MITAYGKVEDAVTALKYGAFDFVSKPVDLEVLRNMVRTALKLRREDLEAPSRPKAAREDADKDAVDKTASSSAQNELMSK
LVGRSQAMERVRQTIRKLARSQAPVLISGESGTGKELAARLIHDLGPRAEEPFLAVNCGAIPSELMESEFFGHIKGSFTG
ADADKQGLFQAADGGTLFLDEVADLPLAMQVKLLRVIQEKSVRPVGGREEKKIDVRILSASHKPLKPLVENGEFRNDLYY
RLNVIELPMPSLRDRRGDIRLLAEHFLQSIGEQWGEPPRQLSRDAMDALQQHRFSGNVRELVNILQRAVTLCEGDEISVE
DLDLDKSVLPEDGIDVKPPEDRSLDDYIEDIERRILENALREAKYNKTEAARQLGISFRSLRYKLKKYDID

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=482127 IC757_RS05825 WP_190976427.1 1340495..1341910(-) (pilR) [Wenzhouxiangella sp. AB-CW3]
ATGACTGAAATGCGAGCACTGGTTGTTGACGACGAACCCGATCTTCGGGAGTTGCTCGACATTACCCTGAGCCGCATGGG
CCTGGAAGTCGATACCGCCGAGAACCTGGCCGAGGCCCGACACTATCTGTCGGCCAATGCCGACTATGCCCTGTGCCTGA
CCGACATGCGACTGCCCGATGGCAACGGGCTGACCCTGATCAAGGAGATCAATCGCGATCACGATCAGCTGCCGGTGGCC
ATGATCACCGCCTACGGCAAGGTCGAGGATGCCGTCACGGCCCTGAAATACGGGGCTTTCGATTTCGTGTCCAAGCCCGT
GGACCTCGAAGTTCTGCGCAACATGGTGCGTACGGCCCTGAAGCTGCGACGCGAGGACCTGGAGGCCCCGTCACGACCCA
AGGCGGCACGGGAAGACGCGGACAAGGACGCAGTCGACAAGACCGCATCAAGCTCGGCGCAAAACGAACTCATGAGCAAG
CTCGTGGGCCGTTCGCAGGCCATGGAGCGGGTCAGGCAGACCATCCGCAAGCTGGCCCGCAGCCAGGCCCCGGTACTGAT
CAGTGGCGAGTCCGGCACAGGCAAGGAGCTGGCCGCCCGGCTCATCCACGACCTGGGCCCCAGGGCCGAAGAACCTTTCC
TTGCCGTCAACTGCGGCGCCATTCCCTCGGAGTTGATGGAAAGCGAGTTCTTCGGCCATATCAAGGGCAGCTTCACCGGC
GCCGATGCCGACAAGCAGGGCCTTTTCCAGGCTGCCGACGGCGGCACGCTGTTTCTCGACGAAGTAGCTGATCTGCCGCT
GGCCATGCAGGTCAAGCTGCTGCGGGTCATCCAGGAAAAGAGCGTTCGGCCGGTAGGCGGTCGTGAAGAGAAGAAGATCG
ACGTACGAATCCTCTCGGCCTCGCACAAGCCGCTCAAGCCACTGGTCGAGAACGGCGAGTTCCGCAACGATCTGTACTAT
CGGCTCAATGTCATCGAACTGCCCATGCCCAGTCTGCGTGACCGTCGCGGGGATATCCGCCTGCTGGCCGAACACTTTCT
CCAATCTATCGGAGAACAATGGGGAGAACCCCCTCGCCAGCTCAGCCGGGATGCCATGGATGCACTGCAGCAGCACCGCT
TCTCCGGCAATGTCCGGGAACTGGTCAACATTCTCCAGCGCGCCGTCACCCTGTGCGAGGGCGACGAAATCAGTGTCGAG
GATCTGGACCTGGATAAATCCGTGCTGCCCGAGGACGGCATCGACGTCAAGCCACCCGAGGACCGCAGCCTGGACGACTA
CATCGAGGATATCGAACGCCGTATCCTCGAAAACGCCCTGCGCGAAGCCAAGTACAACAAGACCGAGGCAGCGCGCCAGC
TCGGCATCTCTTTTCGCTCTCTTCGCTACAAACTGAAGAAGTACGACATAGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(161-327)

Bacterial regulatory protein, Fis family (HTH_8)

(428-468)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H4GQJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

57.415

100

0.575
  pilR Acinetobacter baumannii strain A118

46.074

100

0.473