Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IC757_RS04655 Genome accession   NZ_CP061368
Coordinates   1064402..1065622 (-) Length   406 a.a.
NCBI ID   WP_223846255.1    Uniprot ID   -
Organism   Wenzhouxiangella sp. AB-CW3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1059402..1070622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC757_RS04635 (IC757_04635) - 1061676..1062086 (-) 411 WP_190976208.1 UrcA family protein -
  IC757_RS04640 (IC757_04640) - 1062294..1062902 (-) 609 WP_190976209.1 hypothetical protein -
  IC757_RS04645 (IC757_04645) - 1062903..1063124 (-) 222 WP_190976210.1 hypothetical protein -
  IC757_RS04650 (IC757_04650) pilD 1063446..1064306 (-) 861 WP_190976211.1 prepilin peptidase Machinery gene
  IC757_RS04655 (IC757_04655) pilC 1064402..1065622 (-) 1221 WP_223846255.1 type II secretion system F family protein Machinery gene
  IC757_RS04660 (IC757_04660) pilB 1066459..1068180 (-) 1722 WP_223846256.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IC757_RS04665 (IC757_04665) - 1068421..1069275 (+) 855 WP_190976212.1 glycosyltransferase family 2 protein -
  IC757_RS04670 (IC757_04670) - 1069305..1070375 (+) 1071 WP_190976213.1 DUF354 domain-containing protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44258.34 Da        Isoelectric Point: 9.8409

>NTDB_id=482124 IC757_RS04655 WP_223846255.1 1064402..1065622(-) (pilC) [Wenzhouxiangella sp. AB-CW3]
MATTKDQMQTFLWEGKDKRGKKLKGERLGRNELLVKAELRQQGIIPGRIRKKPKALFGSSGRRITPKDMAVFTRQLATMI
HSGIPLVQAFAIIGQAAENPRMKKLISDIRVDVEGGTTLAEALAKHPLYFDELYVNLVEAGESAGVLDQVLHSIASYKER
MESIKGKIKKAMFYPAAVLAVAIGVTALLLIVIIPQFEDMFVGFGADLPAFTRMVLDLSDFMQRRGWLVLLGTIVAIVGV
IQLKKRNKKFAHALDRLSLRLPILGGVLEKSALARFASTLSTTFAAGVPLVDALRTVAGATGNVVFEEAVYQIREDVATG
HPLQLAMQQTGLFPPMMVQMTAIGEEAGSLDAMLEKVAAFYEEEVNNTVDALSSLIEPIIIVIIGVLVGSLVVAMYLPIF
QMAAVI

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=482124 IC757_RS04655 WP_223846255.1 1064402..1065622(-) (pilC) [Wenzhouxiangella sp. AB-CW3]
ATGGCTACAACCAAGGACCAGATGCAGACCTTCCTGTGGGAAGGCAAGGACAAACGCGGCAAGAAACTCAAGGGGGAGCG
GCTTGGCCGCAACGAGCTGCTGGTAAAGGCCGAACTGCGCCAGCAGGGCATCATTCCCGGCCGCATCCGCAAGAAACCCA
AGGCGCTGTTCGGCAGTTCTGGGCGCCGCATCACGCCCAAAGACATGGCGGTCTTCACGCGCCAGCTCGCCACCATGATC
CACTCCGGCATTCCGCTGGTACAGGCGTTTGCCATCATCGGCCAGGCGGCGGAGAACCCGCGGATGAAGAAGCTGATCTC
CGACATCCGTGTGGATGTCGAGGGCGGCACGACCCTGGCCGAGGCGCTGGCCAAGCACCCGCTGTATTTCGACGAACTCT
ACGTCAACCTGGTCGAAGCCGGCGAAAGTGCCGGTGTGCTCGACCAGGTGCTGCACTCCATCGCCAGCTACAAGGAGCGG
ATGGAATCGATCAAGGGCAAGATCAAGAAGGCCATGTTCTACCCGGCCGCCGTGCTGGCCGTGGCCATCGGCGTGACCGC
GCTGCTGCTGATTGTCATCATCCCGCAGTTCGAGGACATGTTCGTCGGCTTCGGCGCCGATCTGCCGGCTTTTACGCGCA
TGGTCCTCGATCTTTCGGACTTCATGCAGCGGCGTGGCTGGCTGGTTTTGCTCGGCACTATTGTCGCCATTGTCGGCGTT
ATACAGCTGAAAAAGCGCAACAAGAAGTTTGCCCACGCCCTCGACCGCCTGTCGCTGCGCCTGCCCATACTTGGCGGGGT
GCTTGAGAAGTCGGCGCTGGCCCGATTTGCCAGTACCCTGTCCACGACCTTCGCCGCCGGTGTCCCCTTGGTCGACGCAC
TGCGCACGGTGGCTGGCGCCACCGGCAACGTCGTGTTCGAGGAGGCCGTCTACCAGATCCGCGAGGACGTGGCCACCGGA
CATCCCCTGCAGTTGGCCATGCAGCAAACCGGGCTGTTTCCGCCAATGATGGTGCAGATGACCGCCATCGGCGAGGAAGC
CGGTTCACTCGATGCCATGCTGGAGAAGGTCGCCGCCTTCTACGAGGAAGAGGTCAACAACACCGTGGACGCGCTGTCCA
GCCTGATCGAGCCCATCATCATCGTGATCATTGGCGTACTGGTCGGCAGCCTGGTGGTCGCCATGTACCTGCCCATCTTC
CAGATGGCTGCGGTTATCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

55.528

98.03

0.544
  pilC Pseudomonas stutzeri DSM 10701

54.433

100

0.544
  pilC Acinetobacter baylyi ADP1

52.206

100

0.525
  pilC Acinetobacter baumannii D1279779

51.716

100

0.52
  pilG Neisseria gonorrhoeae MS11

45.614

98.276

0.448
  pilG Neisseria meningitidis 44/76-A

45.363

98.276

0.446
  pilC Vibrio cholerae strain A1552

42.963

99.754

0.429
  pilC Vibrio campbellii strain DS40M4

41.872

100

0.419
  pilC Thermus thermophilus HB27

37.965

99.261

0.377