Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   IC588_RS04710 Genome accession   NZ_CP061349
Coordinates   959445..960431 (+) Length   328 a.a.
NCBI ID   WP_042909135.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MSSA01     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 954445..965431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC588_RS04685 (IC588_04685) opp4B 954658..955620 (+) 963 WP_000915997.1 oligopeptide ABC transporter permease -
  IC588_RS04690 (IC588_04690) opp4C 955632..956513 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  IC588_RS04695 (IC588_04695) trpS 956555..957544 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  IC588_RS04700 (IC588_04700) spxA 957839..958234 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  IC588_RS04705 (IC588_04705) mecA 958605..959324 (+) 720 WP_001217728.1 adaptor protein MecA -
  IC588_RS04710 (IC588_04710) coiA 959445..960431 (+) 987 WP_042909135.1 competence protein CoiA Machinery gene
  IC588_RS04715 (IC588_04715) pepF 960479..962287 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  IC588_RS04720 (IC588_04720) yjbH 962747..963553 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  IC588_RS04725 (IC588_04725) - 963576..963941 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  IC588_RS04730 (IC588_04730) - 964045..964638 (-) 594 WP_000224622.1 CYTH domain-containing protein -
  IC588_RS04735 (IC588_04735) - 964824..965171 (+) 348 WP_042909134.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38813.48 Da        Isoelectric Point: 9.6054

>NTDB_id=482025 IC588_RS04710 WP_042909135.1 959445..960431(+) (coiA) [Staphylococcus aureus strain MSSA01]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKLGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKIIELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGFIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=482025 IC588_RS04710 WP_042909135.1 959445..960431(+) (coiA) [Staphylococcus aureus strain MSSA01]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAACTGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTATTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCCGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTTTATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAACCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

98.171

100

0.982
  coiA Staphylococcus aureus MW2

97.561

100

0.976