Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ICI50_RS00040 Genome accession   NZ_CP061341
Coordinates   9385..9912 (+) Length   175 a.a.
NCBI ID   WP_188891702.1    Uniprot ID   -
Organism   Lactobacillus kefiranofaciens strain 1207     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4385..14912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICI50_RS00030 (ICI50_00030) gyrA 6335..8815 (+) 2481 WP_188891699.1 DNA gyrase subunit A -
  ICI50_RS00035 (ICI50_00035) rpsF 9033..9329 (+) 297 WP_188891701.1 30S ribosomal protein S6 -
  ICI50_RS00040 (ICI50_00040) ssb 9385..9912 (+) 528 WP_188891702.1 single-stranded DNA-binding protein Machinery gene
  ICI50_RS00045 (ICI50_00045) rpsR 9938..10174 (+) 237 WP_013854921.1 30S ribosomal protein S18 -
  ICI50_RS00050 (ICI50_00050) - 10306..12327 (+) 2022 WP_188891704.1 DHH family phosphoesterase -
  ICI50_RS00055 (ICI50_00055) rplI 12341..12796 (+) 456 WP_013854919.1 50S ribosomal protein L9 -
  ICI50_RS00060 (ICI50_00060) dnaB 12823..14217 (+) 1395 WP_013854918.1 replicative DNA helicase -
  ICI50_RS00065 (ICI50_00065) - 14550..14711 (-) 162 WP_188891706.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19149.79 Da        Isoelectric Point: 5.2321

>NTDB_id=481980 ICI50_RS00040 WP_188891702.1 9385..9912(+) (ssb) [Lactobacillus kefiranofaciens strain 1207]
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFANSQGERGADFISCVIWRKAAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVIVDNFSLLESRKDREARGQNGGYTPNTGNNNGAPSTNNFQNNGGSQNNNPQNNNNQQHKAQDPFA
GSGDTIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=481980 ICI50_RS00040 WP_188891702.1 9385..9912(+) (ssb) [Lactobacillus kefiranofaciens strain 1207]
ATGATTAATAGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTGCGTACTACTGGGAGTGGAATCTCGGTTGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTGCGAATAGCCAAGGCGAGAGAGGCGCAGACTTTATTAGCTGTGTAATTT
GGAGAAAGGCCGCAGAGAACTTCTGCAACTTTACTTCCAAGGGTTCACTAGTTGGTATTGATGGCCGAATTCAGACCAGA
AGTTATGATAATAAAGATGGGCAACGAGTATATGTCACCGAAGTTATTGTTGATAACTTCTCATTGCTCGAATCACGCAA
GGATCGTGAAGCCCGCGGTCAAAATGGTGGTTACACACCGAATACTGGAAATAATAATGGTGCACCAAGCACTAATAATT
TCCAAAATAATGGTGGATCGCAAAATAATAATCCACAGAATAATAACAATCAACAACATAAGGCGCAAGATCCATTTGCT
GGTTCTGGCGATACGATTGATATTTCTGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.143

100

0.611
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.933

100

0.549