Detailed information NTG0481902

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ICJ54_RS05185
• Genome accession: NZ_CP061335
• Coordinates: 1135593..1136459 (-)
• Length: 288 a.a.
• NCBI ID: WP_189121547.1
• Uniprot ID: -
• Organism: Pseudomonas asiatica strain C1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1130593..1141459

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ICJ54_RS05150 (ICJ54_05150)	-	1130938..1132233 (-)	1296	WP_003260618.1	NAD(P)/FAD-dependent oxidoreductase	-
ICJ54_RS05155 (ICJ54_05155)	-	1132318..1132491 (-)	174	WP_013970765.1	DUF3094 family protein	-
ICJ54_RS05160 (ICJ54_05160)	-	1132625..1133254 (-)	630	WP_013970766.1	DUF1780 domain-containing protein	-
ICJ54_RS05165 (ICJ54_05165)	-	1133310..1133741 (-)	432	WP_015268860.1	hypothetical protein	-
ICJ54_RS05170 (ICJ54_05170)	-	1133828..1134535 (+)	708	WP_139657389.1	energy-coupling factor ABC transporter permease	-
ICJ54_RS05175 (ICJ54_05175)	yacG	1134773..1134973 (-)	201	WP_003260624.1	DNA gyrase inhibitor YacG	-
ICJ54_RS05180 (ICJ54_05180)	coaE	1134970..1135593 (-)	624	WP_085665708.1	dephospho-CoA kinase	-
ICJ54_RS05185 (ICJ54_05185)	pilD	1135593..1136459 (-)	867	WP_189121547.1	A24 family peptidase	Machinery gene
ICJ54_RS05190 (ICJ54_05190)	-	1136462..1137670 (-)	1209	WP_189121548.1	type II secretion system F family protein	-
ICJ54_RS05195 (ICJ54_05195)	-	1137887..1138297 (+)	411	WP_189121549.1	pilin	-
ICJ54_RS25915	-	1138614..1138940 (-)	327	WP_223998040.1	hypothetical protein	-
ICJ54_RS26390	-	1139133..1139243 (-)	111	Protein_1016	hypothetical protein	-
ICJ54_RS05210 (ICJ54_05210)	-	1139296..1140756 (-)	1461	WP_189121550.1	AAA family ATPase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32033.19 Da
• Isoelectric Point: 7.9596

>NTDB_id=481902 ICJ54_RS05185 WP_189121547.1 1135593..1136459(-) (pilD) [Pseudomonas asiatica strain C1]
MTLWTLLAEQPAYFVTLATVLGLLVGSFLNVLVYRLPIMLERQWQREAQEMLELPITPHERFDLWLPASRCPHCAHRIRA
WENIPVISYLALRGRCSACKTRISPRYPLVELASALLSLVVAWRFGASPEALLALPLTWCLLTLSLIDAEHQLLPDALVL
PMLWLGLIVNAFGLYVPLTSALWGAVAGYLSLWTVYWLFKLATGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LAGLCLLRLRRHAMGTAIPFGPYLAIAGWIAVLWGDEIYASYTNLLGF

Nucleotide

• Length: 867 bp

>NTDB_id=481902 ICJ54_RS05185 WP_189121547.1 1135593..1136459(-) (pilD) [Pseudomonas asiatica strain C1]
ATGACTTTATGGACTTTGCTGGCTGAGCAGCCGGCGTACTTTGTCACCCTGGCCACGGTGCTAGGCCTGCTGGTGGGCAG
TTTTCTCAATGTGCTGGTGTACCGCCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCGCAGGAAATGCTGGAGT
TGCCGATCACGCCGCACGAGCGTTTCGACCTGTGGCTACCCGCCTCGCGCTGCCCGCATTGTGCGCATCGGATTCGCGCA
TGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGCGCGGGCGTTGTTCAGCCTGCAAAACCCGCATCAGCCCGCGCTA
CCCATTGGTGGAGTTAGCCAGCGCGCTGCTGTCGCTGGTGGTGGCCTGGCGCTTTGGTGCTTCGCCCGAGGCCTTGCTGG
CGCTGCCGCTGACCTGGTGCCTGCTGACCCTGAGCCTGATCGATGCCGAGCACCAGTTGCTGCCGGATGCGCTGGTGCTG
CCGATGCTGTGGCTGGGGCTGATCGTCAACGCCTTTGGCCTCTACGTCCCGCTGACCAGTGCGTTGTGGGGCGCGGTGGC
TGGGTACCTCAGCCTTTGGACGGTGTATTGGCTGTTCAAGCTGGCCACTGGCAAGGAAGGCATGGGCTATGGCGACTTCA
AGCTGATGGCGCTGATCGGGGCCTGGGGTGGCTGGCAGGTGTTGCCGTTGACCCTGCTGCTGTCATCGGTGGTCGGGGCG
CTGGCTGGGCTGTGCCTGTTGCGCTTGCGCCGCCATGCCATGGGCACGGCGATCCCGTTTGGCCCCTATCTGGCGATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACACAAACCTGCTTGGATTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.909	95.486	0.524
pilD	Acinetobacter baumannii D1279779	52.5	97.222	0.51
pilD	Acinetobacter nosocomialis M2	51.786	97.222	0.503
pilD	Vibrio campbellii strain DS40M4	50.89	97.569	0.497
pilD	Neisseria gonorrhoeae MS11	50.929	93.403	0.476