Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AT6N2_RS10015 Genome accession   NZ_CP072308
Coordinates   2008818..2009423 (+) Length   201 a.a.
NCBI ID   WP_003524309.1    Uniprot ID   A0A9X3KDD9
Organism   Agrobacterium tumefaciens strain 6N2     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2003818..2014423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT6N2_RS09985 (AT6N2_C2490) nudC 2004217..2005179 (-) 963 WP_209086177.1 NAD(+) diphosphatase -
  AT6N2_RS09990 (AT6N2_C2491) - 2005179..2005607 (-) 429 WP_063949788.1 HIT family protein -
  AT6N2_RS10000 (AT6N2_C2492) - 2005865..2007742 (+) 1878 WP_209086180.1 DNA polymerase III subunit gamma/tau -
  AT6N2_RS10005 (AT6N2_C2493) - 2007767..2008090 (+) 324 WP_063949339.1 YbaB/EbfC family nucleoid-associated protein -
  AT6N2_RS10010 (AT6N2_C2494) - 2008145..2008780 (-) 636 WP_209086195.1 MOSC domain-containing protein -
  AT6N2_RS10015 (AT6N2_C2497) recR 2008818..2009423 (+) 606 WP_003524309.1 recombination mediator RecR Machinery gene
  AT6N2_RS10020 (AT6N2_C2498) - 2009462..2010727 (+) 1266 WP_209086209.1 lytic murein transglycosylase -
  AT6N2_RS10025 (AT6N2_C2499) - 2010719..2011201 (-) 483 WP_233282434.1 GNAT family N-acetyltransferase -
  AT6N2_RS10030 (AT6N2_C2502) - 2011284..2012912 (-) 1629 WP_063949335.1 MFS transporter -
  AT6N2_RS10035 (AT6N2_C2503) rimP 2013198..2013794 (+) 597 WP_144576252.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21443.77 Da        Isoelectric Point: 6.3321

>NTDB_id=481859 AT6N2_RS10015 WP_003524309.1 2008818..2009423(+) (recR) [Agrobacterium tumefaciens strain 6N2]
MAKRVTGPEIEKLIQLLAKVPGLGPRSARRAALHLIKKKEQLLGPLGHAMGEAYDKVKICSCCGNVDTIDPCTVCTDDRR
DQSVIIVVEDVSDLWALERTGAMNTAYHVLGGTLSPLDGVGPEDLNIKGLIDRVSAGGIRELIIAVNATVEGQATAHYIT
DRLSGLDIKITRLAHGVPVGGELDYLDEGTLTAALRARTTI

Nucleotide


Download         Length: 606 bp        

>NTDB_id=481859 AT6N2_RS10015 WP_003524309.1 2008818..2009423(+) (recR) [Agrobacterium tumefaciens strain 6N2]
ATGGCAAAACGAGTCACTGGCCCTGAAATCGAAAAACTGATCCAGCTTCTGGCAAAAGTGCCGGGGCTTGGCCCCCGCTC
GGCGCGCCGGGCGGCGCTGCATCTCATCAAGAAGAAGGAGCAGCTTCTCGGGCCTTTGGGACACGCCATGGGCGAAGCCT
ACGACAAAGTGAAGATCTGCTCCTGCTGCGGCAATGTCGATACGATCGATCCCTGCACCGTCTGCACCGACGACCGGCGC
GATCAGTCGGTCATCATCGTGGTGGAAGACGTGTCGGATTTGTGGGCGCTCGAGCGGACAGGCGCGATGAACACCGCCTA
TCATGTTCTGGGTGGCACGCTGTCGCCGCTGGACGGCGTTGGGCCGGAGGACCTGAACATCAAGGGCCTCATCGACCGTG
TGAGCGCCGGCGGCATTCGCGAACTCATCATCGCCGTCAATGCGACTGTGGAAGGGCAGGCAACCGCCCATTACATCACC
GACCGCCTCTCCGGTCTCGACATCAAGATCACCCGGCTTGCGCACGGCGTGCCGGTGGGCGGTGAGCTCGATTATCTCGA
TGAGGGGACATTGACGGCGGCGCTTCGGGCGCGCACGACAATCTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-174)

RecR protein (RecR_ZnF)

(45-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9X3KDD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.876

96.517

0.443
  recR Bacillus subtilis subsp. subtilis str. 168

45.312

95.522

0.433
  recR Streptococcus pneumoniae R6

39.062

95.522

0.373