Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AT6N2_RS00205 Genome accession   NZ_CP072308
Coordinates   44581..46254 (+) Length   557 a.a.
NCBI ID   WP_209087579.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain 6N2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 39581..51254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT6N2_RS00190 (AT6N2_C0048) ftsZ 40475..42232 (+) 1758 WP_063950568.1 cell division protein FtsZ -
  AT6N2_RS00195 (AT6N2_C0051) lpxC 42506..43465 (+) 960 WP_063950567.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  AT6N2_RS00200 (AT6N2_C0052) - 43699..44565 (+) 867 WP_063950566.1 outer membrane protein assembly factor BamD -
  AT6N2_RS00205 (AT6N2_C0054) recN 44581..46254 (+) 1674 WP_209087579.1 DNA repair protein RecN Machinery gene
  AT6N2_RS00210 (AT6N2_C0055) - 46251..46865 (-) 615 WP_209087581.1 LysE family translocator -
  AT6N2_RS00215 (AT6N2_C0056) ligA 46998..49172 (+) 2175 WP_209087583.1 NAD-dependent DNA ligase LigA -
  AT6N2_RS00220 (AT6N2_C0057) - 49235..50137 (+) 903 WP_063950562.1 aminoglycoside phosphotransferase family protein -
  AT6N2_RS00225 (AT6N2_C0059) - 50134..50667 (-) 534 WP_063950561.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 60150.91 Da        Isoelectric Point: 4.9631

>NTDB_id=481837 AT6N2_RS00205 WP_209087579.1 44581..46254(+) (recN) [Agrobacterium tumefaciens strain 6N2]
MLVQLSIRDIVLIERLDLGFEAGLSVLTGETGAGKSILLDSLSLALGGRGDGGLVRHGEDKGQVTATFEVPNDHPTRLLL
RENGLDDDGDLIFRRVQSADGRTKAYVNDQAVSVQMMRQLGQLLVEIHGQHDDRALVDTDAHRTLLDAFAGLSDEARSVQ
GLYRTWKDAERALKTHRAKVEAAAREADYLRSSVEELETLSPRDGEEDELAERRAVMQKSERIAGDIAEASEFLNGNASP
VPVIASMMRRLERKSHEAPGLLEDTVQLLDAALDSLSNAQMEVEAALRRTEFDPRELERVEERLFALRAAGRKYNVAVPD
LPALAEKMVADLADLDAGEEKLGKLEANLGVVKADFDRAAHSLSEKRRHAAEALSSAVMAELPALKLERARFTVEVTSDP
EQATADGIDTVEFHVQTNPGTRPGPIMKVASGGELSRFLLALKVALADRGSAPTLVFDEIDTGVGGAVADAIGQRLRRLS
KTVQVLSVTHAPQVAARAATHLLISKGPSGDGSERIATRVATMEPQHRTEEIARMLAGASVTDEARAAAARLLAAKD

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=481837 AT6N2_RS00205 WP_209087579.1 44581..46254(+) (recN) [Agrobacterium tumefaciens strain 6N2]
ATGCTGGTCCAGCTCTCGATTCGCGATATCGTTCTCATCGAAAGGCTCGACCTCGGTTTCGAGGCGGGCCTTTCCGTGTT
GACGGGCGAGACGGGTGCGGGCAAATCCATTCTGCTTGACAGTCTTTCGCTTGCCCTTGGCGGGCGCGGGGACGGCGGCC
TCGTGCGCCACGGCGAAGACAAGGGGCAGGTGACGGCCACTTTCGAAGTTCCGAACGATCATCCGACCCGGCTTCTGCTG
CGCGAAAATGGTCTCGATGACGACGGCGATCTTATTTTCCGTCGCGTTCAATCGGCCGACGGGCGCACCAAGGCTTATGT
CAACGACCAGGCCGTAAGCGTGCAGATGATGCGGCAGCTCGGTCAGTTGCTGGTCGAAATCCATGGCCAACACGACGACC
GCGCCCTTGTCGATACCGACGCGCACCGCACCTTGCTGGATGCCTTTGCCGGGCTCAGCGATGAGGCGCGGAGCGTTCAG
GGACTCTACCGGACCTGGAAAGATGCCGAACGGGCGCTGAAGACCCACCGCGCCAAGGTGGAGGCGGCGGCGCGTGAGGC
GGATTACCTGCGGTCCTCCGTCGAGGAACTGGAAACGCTTTCGCCGCGCGACGGCGAAGAGGATGAGCTGGCAGAACGTC
GGGCCGTGATGCAGAAATCCGAACGTATTGCCGGTGATATCGCTGAGGCGAGCGAATTTCTGAATGGCAATGCTTCGCCC
GTGCCTGTCATCGCCTCGATGATGCGGCGTCTGGAACGTAAGAGCCATGAGGCGCCCGGCCTTCTGGAAGACACCGTACA
ATTGCTGGATGCCGCGCTCGATAGCCTCTCCAACGCGCAGATGGAAGTGGAGGCGGCTCTGCGCCGCACCGAGTTCGATC
CGCGTGAGCTCGAGCGGGTAGAGGAGCGGCTGTTTGCGCTGCGCGCCGCTGGACGCAAATACAACGTCGCCGTACCTGAC
CTTCCGGCTCTCGCCGAAAAAATGGTTGCCGATCTCGCCGACCTCGATGCCGGTGAAGAAAAGCTCGGCAAGCTCGAGGC
CAATCTCGGTGTGGTCAAAGCTGATTTCGACCGGGCCGCCCACTCGCTTTCTGAGAAGCGCCGTCATGCCGCGGAGGCTC
TTTCGAGCGCCGTGATGGCGGAACTCCCGGCGCTGAAACTGGAGCGGGCGCGGTTTACGGTCGAGGTGACGTCCGATCCC
GAACAGGCGACGGCTGACGGCATCGATACGGTGGAATTCCACGTCCAGACCAATCCGGGCACGCGCCCCGGCCCGATCAT
GAAGGTTGCCTCGGGCGGCGAGCTGTCGCGCTTCCTTCTGGCACTGAAAGTCGCGCTTGCCGACCGCGGCTCGGCACCCA
CGCTGGTCTTCGATGAAATCGACACCGGCGTTGGCGGAGCAGTGGCGGATGCCATCGGCCAGCGTCTGCGCCGCCTGTCC
AAAACCGTACAGGTTCTCTCCGTTACCCATGCACCGCAGGTGGCGGCGCGGGCGGCGACCCATCTTCTCATTTCCAAGGG
GCCCTCGGGCGATGGCAGTGAGCGCATTGCCACGCGCGTCGCCACCATGGAGCCGCAGCACCGCACCGAAGAAATTGCCC
GCATGCTTGCCGGCGCGTCGGTAACGGATGAGGCGCGGGCTGCGGCTGCGCGCCTGCTGGCGGCCAAGGACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(14-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

34.768

100

0.363
  recN Neisseria gonorrhoeae strain FA1090

36.086

100

0.361