Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   ICJ61_RS19770 Genome accession   NZ_CP061284
Coordinates   3821966..3822085 (+) Length   39 a.a.
NCBI ID   WP_010332289.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XH-1     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3816966..3827085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICJ61_RS19750 (ICJ61_19750) - 3817986..3818687 (+) 702 WP_106019734.1 bacteriocin biosynthesis protein AlbG -
  ICJ61_RS19755 (ICJ61_19755) - 3818694..3819050 (-) 357 Protein_3884 YncE family protein -
  ICJ61_RS22395 - 3819042..3819209 (-) 168 Protein_3885 YncE family protein -
  ICJ61_RS19760 (ICJ61_19760) - 3819250..3820608 (-) 1359 WP_106019735.1 YncE family protein -
  ICJ61_RS19765 (ICJ61_19765) rapF 3820837..3821982 (+) 1146 WP_188323349.1 tetratricopeptide repeat protein Regulator
  ICJ61_RS19770 (ICJ61_19770) phrF 3821966..3822085 (+) 120 WP_010332289.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  ICJ61_RS19775 (ICJ61_19775) - 3822338..3822817 (+) 480 WP_061572213.1 hypothetical protein -
  ICJ61_RS19780 (ICJ61_19780) - 3822966..3823754 (+) 789 WP_188323350.1 hypothetical protein -
  ICJ61_RS19785 (ICJ61_19785) - 3823741..3824415 (+) 675 WP_188323351.1 hypothetical protein -
  ICJ61_RS19790 (ICJ61_19790) - 3824425..3825222 (+) 798 WP_223203941.1 hypothetical protein -
  ICJ61_RS19795 (ICJ61_19795) - 3825225..3825872 (+) 648 WP_188323353.1 ABC transporter ATP-binding protein -
  ICJ61_RS19800 (ICJ61_19800) - 3825865..3826425 (+) 561 WP_188323354.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4160.08 Da        Isoelectric Point: 10.4997

>NTDB_id=481561 ICJ61_RS19770 WP_010332289.1 3821966..3822085(+) (phrF) [Bacillus halotolerans strain XH-1]
MKLKSKILLSCLALSTVFVATSIATAPAHQMEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=481561 ICJ61_RS19770 WP_010332289.1 3821966..3822085(+) (phrF) [Bacillus halotolerans strain XH-1]
ATGAAATTGAAGTCTAAAATATTACTCTCTTGTCTGGCCCTAAGCACAGTGTTTGTCGCAACAAGTATTGCAACTGCACC
TGCACATCAAATGGAAGTTGCTCAGCGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

85.185

69.231

0.59
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462