Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   NMBNZ0533_RS05285 Genome accession   NC_017518
Coordinates   990751..991344 (+) Length   197 a.a.
NCBI ID   WP_014581125.1    Uniprot ID   -
Organism   Neisseria meningitidis NZ-05/33     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 985751..996344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBNZ0533_RS05260 (NMBNZ0533_0934) - 986029..986616 (-) 588 WP_002223431.1 superoxide dismutase -
  NMBNZ0533_RS05265 (NMBNZ0533_0935) dnaB 986780..988186 (+) 1407 WP_002220671.1 replicative DNA helicase -
  NMBNZ0533_RS05270 (NMBNZ0533_0936) pilH 988495..989163 (+) 669 WP_014582407.1 GspH/FimT family pseudopilin Machinery gene
  NMBNZ0533_RS05275 (NMBNZ0533_0937) pilV 989193..989807 (+) 615 WP_014581127.1 type IV pilus modification protein PilV Machinery gene
  NMBNZ0533_RS05280 (NMBNZ0533_0938) pilJ 989804..990772 (+) 969 WP_014582408.1 PilW family protein Machinery gene
  NMBNZ0533_RS05285 (NMBNZ0533_0939) pilK 990751..991344 (+) 594 WP_014581125.1 pilus assembly protein Machinery gene
  NMBNZ0533_RS05290 (NMBNZ0533_0940) pilX 991349..991822 (+) 474 WP_014581124.1 PilX family type IV pilin Machinery gene
  NMBNZ0533_RS05295 (NMBNZ0533_0941) dut 992385..992837 (+) 453 WP_002229326.1 dUTP diphosphatase -
  NMBNZ0533_RS05300 (NMBNZ0533_0942) dapC 992914..994101 (+) 1188 WP_014582409.1 succinyldiaminopimelate transaminase -
  NMBNZ0533_RS05305 (NMBNZ0533_0943) yaaA 994265..995044 (+) 780 WP_002235690.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21683.63 Da        Isoelectric Point: 6.3910

>NTDB_id=48154 NMBNZ0533_RS05285 WP_014581125.1 990751..991344(+) (pilK) [Neisseria meningitidis NZ-05/33]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRFCPANSTDLCIDKKGMEYKKGKGSVSKPPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=48154 NMBNZ0533_RS05285 WP_014581125.1 990751..991344(+) (pilK) [Neisseria meningitidis NZ-05/33]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTTTTGCCCTGCAAATTCTACCG
ACCTGTGCATTGACAAGAAAGGGATGGAATATAAGAAAGGCAAGGGAAGCGTCAGCAAACCACCGCGCTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

86.139

100

0.883

Multiple sequence alignment