Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   D39N_RS06995 Genome accession   NZ_CP061208
Coordinates   1419373..1420605 (-) Length   410 a.a.
NCBI ID   WP_000106346.1    Uniprot ID   A0A064C077
Organism   Streptococcus pneumoniae strain D39_P0     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1414373..1425605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D39N_RS06965 (D39N_01404) - 1414560..1415528 (+) 969 WP_000080996.1 NAD(P)/FAD-dependent oxidoreductase -
  D39N_RS06970 (D39N_01405) whiA 1415562..1416473 (-) 912 WP_000011306.1 DNA-binding protein WhiA -
  D39N_RS06975 (D39N_01406) - 1416470..1417447 (-) 978 WP_001231087.1 YvcK family protein -
  D39N_RS06980 (D39N_01407) rapZ 1417444..1418334 (-) 891 WP_000163025.1 RNase adapter RapZ -
  D39N_RS06985 (D39N_01408) - 1418386..1418766 (-) 381 WP_001140412.1 RidA family protein -
  D39N_RS06990 (D39N_01409) yihA 1418777..1419364 (-) 588 WP_000422599.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  D39N_RS06995 (D39N_01410) clpX 1419373..1420605 (-) 1233 WP_000106346.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  D39N_RS07000 (D39N_01411) - 1420637..1420807 (-) 171 WP_000442275.1 hypothetical protein -
  D39N_RS07005 (D39N_01412) - 1420807..1421313 (-) 507 WP_000162439.1 dihydrofolate reductase -
  D39N_RS07010 (D39N_01413) - 1421443..1421961 (-) 519 WP_000229876.1 Dps family protein -
  D39N_RS07015 (D39N_01414) lytC 1422457..1423962 (-) 1506 WP_075825861.1 choline binding-anchored murein hydrolase LytC -
  D39N_RS07020 (D39N_01415) tpiA 1424000..1424758 (-) 759 WP_000087897.1 triose-phosphate isomerase -
  D39N_RS07025 (D39N_01416) - 1424856..1425533 (-) 678 WP_000221615.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45798.35 Da        Isoelectric Point: 4.4550

>NTDB_id=481404 D39N_RS06995 WP_000106346.1 1419373..1420605(-) (clpX) [Streptococcus pneumoniae strain D39_P0]
MSTNRKNDMMVYCSFCGKNQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQVADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKETVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=481404 D39N_RS06995 WP_000106346.1 1419373..1420605(-) (clpX) [Streptococcus pneumoniae strain D39_P0]
ATGTCTACAAATAGAAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAACCAAGAAGAAGTACAAAAAATAAT
TGCTGGCAACAATGCTTTTATTTGTAATGAATGCGTGGAGTTAGCTCAGGAAATCATTCGAGAAGAATTGGTTGAGGAAG
TCTTGGCAGACTTGTCTGAGGTGCCAAAACCAATTGAACTCCTCCATATCTTGAACCACTATGTAATTGGTCAAGATCGT
GCCAAGCGTGCCTTGGCAGTGGCGGTTTATAACCACTACAAACGCATCAATTTCCACGATACACGCGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATTTTGATGATTGGCCCAACTGGTTCAGGGAAAACTTTCCTTGCCCAGACCTTGGCTA
AGAGCTTGAATGTGCCTTTTGCTATTGCGGATGCGACAGCTCTGACGGAGGCTGGTTATGTGGGTGAGGACGTGGAAAAT
ATCCTCCTCAAACTCTTGCAGGTTGCTGACTTTAACATCGAACGTGCAGAGCGTGGCATTATCTATGTGGATGAAATTGA
CAAGATTGCCAAGAAGAGTGAGAATGTGTCTATCACACGTGATGTTTCTGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATCGAGGGAACTGTTGCTAGCGTACCGCCTCAAGGTGGACGCAAACATCCACAACAAGAGATGATTCAAGTGGATACA
AAAAATATCCTCTTCATCGTGGGTGGTGCTTTTGATGGTATTGAAGAAATTGTCAAACAACGTCTGGGTGAAAAAGTCAT
CGGATTTGGTCAAAACAATAAGGCGATTGACGAAAACAGCTCATACATGCAAGAAATCATCGCTGAAGACATTCAAAAAT
TTGGTATTATCCCTGAGTTGATTGGACGCTTGCCTGTTTTTGCGGCTCTTGAGCAATTGACCGTTGATGACTTGGTTCGC
ATCTTGAAAGAGCCAAGAAATGCCTTGGTGAAACAGTACCAAACCTTGCTTTCTTATGATGATGTTGAGTTGGAATTTGA
CGACGAAGCCCTTCAAGAGATTGCTAATAAAGCAATCGAACGGAAGACAGGGGCGCGTGGACTTCGCTCCATCATCGAAG
AAACCATGCTAGATGTTATGTTTGAGGTGCCGAGTCAGGAAAATGTGAAATTGGTTCGCATCACTAAAGAAACTGTCGAT
GGAACGGATAAACCGATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A064C077

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.585

100

0.866
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.214

98.049

0.561