Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   D39N_RS04240 Genome accession   NZ_CP061208
Coordinates   857911..858561 (+) Length   216 a.a.
NCBI ID   WP_000387330.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain D39_P0     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 852911..863561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D39N_RS04195 (D39N_00852) - 853394..853609 (+) 216 WP_001232082.1 YozE family protein -
  D39N_RS04200 (D39N_00853) - 853695..854663 (+) 969 WP_000658183.1 PhoH family protein -
  D39N_RS04210 (D39N_00854) - 854856..855356 (+) 501 WP_000566988.1 GNAT family N-acetyltransferase -
  D39N_RS04215 (D39N_00855) - 855359..855685 (+) 327 Protein_849 TfoX/Sxy family protein -
  D39N_RS10530 ald 855986..857097 (-) 1112 Protein_850 alanine dehydrogenase -
  D39N_RS04235 (D39N_00858) - 857274..857843 (+) 570 WP_000443899.1 GNAT family N-acetyltransferase -
  D39N_RS04240 (D39N_00859) comEA/celA/cilE 857911..858561 (+) 651 WP_000387330.1 ComEA family DNA-binding protein Machinery gene
  D39N_RS04245 (D39N_00860) comEC/celB 858545..860785 (+) 2241 WP_000942407.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  D39N_RS04250 - 860964..861152 (+) 189 WP_010976492.1 hypothetical protein -
  D39N_RS04255 (D39N_00861) - 861184..861771 (+) 588 Protein_855 ABC transporter ATP-binding protein -
  D39N_RS04260 (D39N_00862) - 861775..862956 (+) 1182 WP_000655958.1 ABC transporter permease -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23229.65 Da        Isoelectric Point: 5.5171

>NTDB_id=481392 D39N_RS04240 WP_000387330.1 857911..858561(+) (comEA/celA/cilE) [Streptococcus pneumoniae strain D39_P0]
MEAIIEKIKEYKIIVICTGLGLLVGGFFLLKPAPQTPVKETNLQAEVAAVSKDLVSEKEVNKEEKEEPLEQDLITVDVKG
AVKSPGIYDLPVGSRVNDAVQKAGGLTEQADSKSLNLAQKVSDEALVYVPTKGEEAVSQQTGLGTASSISKEKKVNLNKA
SLEELKQVKGLGGKRAQDIIDHREANGKFKSVDELKKVSGIGGKTIEKLKDYVTVD

Nucleotide


Download         Length: 651 bp        

>NTDB_id=481392 D39N_RS04240 WP_000387330.1 857911..858561(+) (comEA/celA/cilE) [Streptococcus pneumoniae strain D39_P0]
ATGGAAGCAATTATCGAGAAAATCAAAGAGTATAAAATCATCGTCATCTGTACTGGTCTGGGCTTGCTTGTAGGAGGATT
TTTCCTGCTAAAACCAGCTCCACAAACACCTGTCAAAGAGACGAATTTGCAGGCTGAAGTCGCAGCTGTTTCCAAGGATT
TGGTATCCGAAAAGGAAGTGAACAAGGAAGAAAAGGAAGAACCCCTTGAACAAGATCTAATCACAGTAGATGTCAAAGGT
GCTGTCAAATCGCCAGGGATTTATGACTTGCCTGTAGGTAGTCGAGTCAATGATGCTGTTCAGAAGGCTGGTGGCTTGAC
AGAGCAAGCAGACAGCAAGTCGCTCAATCTAGCTCAGAAAGTTAGTGATGAGGCTCTGGTTTACGTTCCTACTAAGGGAG
AAGAAGCAGTTAGCCAACAGACTGGTTTGGGGACAGCTTCTTCAATAAGCAAGGAAAAGAAGGTCAATCTCAACAAGGCC
AGTCTGGAAGAACTCAAGCAGGTCAAGGGACTGGGAGGAAAACGAGCTCAGGACATTATCGACCATCGTGAGGCAAATGG
CAAGTTCAAGTCAGTAGACGAGCTCAAGAAGGTCTCTGGCATTGGTGGCAAAACAATAGAAAAGCTTAAAGACTATGTTA
CAGTGGATTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(151-214)

SLBB domain (SLBB)

(76-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.