Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   D39N_RS02335 Genome accession   NZ_CP061208
Coordinates   474813..475544 (+) Length   243 a.a.
NCBI ID   WP_000889919.1    Uniprot ID   A0A062WNF5
Organism   Streptococcus pneumoniae strain D39_P0     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 469813..480544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D39N_RS02310 (D39N_00461) dnaK 470002..471825 (+) 1824 WP_000034662.1 molecular chaperone DnaK -
  D39N_RS02315 (D39N_00462) - 471827..472183 (+) 357 WP_000114427.1 hypothetical protein -
  D39N_RS02320 (D39N_00463) dnaJ 472585..473703 (+) 1119 WP_001066302.1 molecular chaperone DnaJ -
  D39N_RS02325 (D39N_00464) - 474038..474325 (-) 288 WP_000777760.1 hypothetical protein -
  D39N_RS02330 (D39N_00465) - 474335..474745 (-) 411 WP_001278301.1 HIT family protein -
  D39N_RS02335 (D39N_00466) pptA 474813..475544 (+) 732 WP_000889919.1 ABC transporter ATP-binding protein Regulator
  D39N_RS02340 (D39N_00467) - 475541..476590 (+) 1050 WP_000653770.1 ABC transporter permease -
  D39N_RS02345 (D39N_00468) - 476758..477087 (-) 330 WP_000132569.1 hypothetical protein -
  D39N_RS02350 (D39N_00469) - 477363..477701 (+) 339 WP_000682124.1 LytTR family DNA-binding domain-containing protein -
  D39N_RS02355 (D39N_00470) comE/blpR 477706..478443 (+) 738 WP_001219139.1 response regulator transcription factor Regulator
  D39N_RS02360 (D39N_00471) - 478457..479797 (+) 1341 WP_001017622.1 sensor histidine kinase -
  D39N_RS02365 (D39N_00472) blpC 479839..479994 (-) 156 WP_000358817.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27012.49 Da        Isoelectric Point: 4.7737

>NTDB_id=481384 D39N_RS02335 WP_000889919.1 474813..475544(+) (pptA) [Streptococcus pneumoniae strain D39_P0]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=481384 D39N_RS02335 WP_000889919.1 474813..475544(+) (pptA) [Streptococcus pneumoniae strain D39_P0]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAGATGTTCCGTCTGGACCAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WNF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712