Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMBM01240355_RS15565 Genome accession   NC_017517
Coordinates   2145056..2145520 (-) Length   154 a.a.
NCBI ID   WP_162467406.1    Uniprot ID   -
Organism   Neisseria meningitidis M01-240355     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2140056..2150520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM01240355_RS10845 (NMBM01240355_1942) - 2141596..2142651 (-) 1056 WP_002261652.1 DNA cytosine methyltransferase -
  NMBM01240355_RS10855 (NMBM01240355_1943) - 2143057..2143530 (-) 474 Protein_2051 IS5/IS1182 family transposase -
  NMBM01240355_RS10860 (NMBM01240355_1944) - 2143762..2143974 (+) 213 WP_002224145.1 hypothetical protein -
  NMBM01240355_RS10870 (NMBM01240355_1946) comP 2144519..2144968 (-) 450 WP_002214937.1 type IV pilin protein Machinery gene
  NMBM01240355_RS15565 comE 2145056..2145520 (-) 465 WP_162467406.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16576.84 Da        Isoelectric Point: 10.8773

>NTDB_id=48130 NMBM01240355_RS15565 WP_162467406.1 2145056..2145520(-) (comE) [Neisseria meningitidis M01-240355]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASLQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=48130 NMBM01240355_RS15565 WP_162467406.1 2145056..2145520(-) (comE) [Neisseria meningitidis M01-240355]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCTGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCCGTCGGCGCGCCCGCACCAAAAGGCCCAGCCAAACCAGTGCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment