Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   NMBM01240355_RS04305 Genome accession   NC_017517
Coordinates   840302..843916 (-) Length   1204 a.a.
NCBI ID   WP_014581903.1    Uniprot ID   -
Organism   Neisseria meningitidis M01-240355     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 835302..848916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM01240355_RS04285 (NMBM01240355_0782) hemE 836392..837456 (+) 1065 WP_014581900.1 uroporphyrinogen decarboxylase -
  NMBM01240355_RS04290 (NMBM01240355_0783) radA 837645..839024 (+) 1380 WP_014581901.1 DNA repair protein RadA Machinery gene
  NMBM01240355_RS04295 (NMBM01240355_0784) - 839300..839779 (-) 480 WP_002239618.1 DUF302 domain-containing protein -
  NMBM01240355_RS04300 (NMBM01240355_0785) - 839904..840263 (-) 360 WP_014581902.1 rhodanese-like domain-containing protein -
  NMBM01240355_RS04305 (NMBM01240355_0786) recB 840302..843916 (-) 3615 WP_014581903.1 exodeoxyribonuclease V subunit beta Machinery gene
  NMBM01240355_RS04310 (NMBM01240355_0787) - 844149..845057 (-) 909 WP_014581904.1 Dyp-type peroxidase -
  NMBM01240355_RS04315 (NMBM01240355_0788) - 845342..846169 (+) 828 WP_002221189.1 amino acid ABC transporter substrate-binding protein -
  NMBM01240355_RS04320 (NMBM01240355_0789) - 846159..846875 (+) 717 WP_002213985.1 amino acid ABC transporter permease -
  NMBM01240355_RS04325 (NMBM01240355_0790) - 846885..847640 (+) 756 WP_002244497.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 1204 a.a.        Molecular weight: 134480.99 Da        Isoelectric Point: 5.7175

>NTDB_id=48102 NMBM01240355_RS04305 WP_014581903.1 840302..843916(-) (recB) [Neisseria meningitidis M01-240355]
MSAPIQAFDPLTVPISGTNLIEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDDVLQVLE
SKGIAKLGDDTLSDGIAAYCAEHHEGDTFLPELLKQALQKEGRTRLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLC
QAPFDVELTEEDGDRLLIPAQDFWRERVSNDPVLAALAFKRKAVPQTVLAQISRYLSRPYLNFRRPQADLKQAQRNAETS
WQTICRLLPELEAGFWRIHPDLNGNSYRKNSFGNLFKELAQKSAAGQLPFLDKDTHDRLLKLASDKLEAGLKKGKTPDAA
VFAELQKLADFGRDLNALEEAEEATMIRLQLDLIEYLNRSLAEMKKSRRERGFDDLLLDVHTALTDNPHAETLARAVAEN
WETALIDEFQDTDPLQYEIFQKIFIAQNRPLFLVGDPKQAIYSFRGADIYAYLQAAEDARHRYTLATNYRSHAALIGSIG
ALFRLKERPFVLENIGYSEVGAARAESRLSPKRPAVQVRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAAGGRLNF
KGCPLQSGDIAVLVRTHNEAVMVSAALKKRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSSIFGYNA
QQLHDFNQNESEILHWAESARTALDNWNQYGIFAAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAA
LHKWLRDQISLAGNNGGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAKAQ
LSEDEQKQHADEEMAERLRLLYVALTRAEEQLNIYAAYSTNTADNPLAYLIEGLPQDSRETVRCAYACEKDGIAMLKRNW
QRLTDNAPSGTDFAFTEDVPPPAVYCGNAGQTAEFAANSIPERGFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETS
VPAMPSETPTASDGISIHNFPKGTQAGLCLHEILEDFKFGQAAARQETLIADKLKKYGFEEIWLPAVAEMAEACQKTPLT
GAYGLSDIPPECRCPEMGFTLHTEDFGLKRLRDWFARDDVRLPEVCRAAAETLDFHTVNGFLNGFIDMVCQDPDGNICVI
DYKSNHLGADASAYTQQAMDEAVTHHHYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRGLDGKGGGVWRWDIDAAAL
EQIK

Nucleotide


Download         Length: 3615 bp        

>NTDB_id=48102 NMBM01240355_RS04305 WP_014581903.1 840302..843916(-) (recB) [Neisseria meningitidis M01-240355]
ATGTCTGCACCCATCCAAGCATTCGACCCGCTGACCGTCCCCATTTCCGGCACCAACCTGATTGAGGCCTCTGCCGGCAC
CGGCAAAACCTACGGCATTGCCGCCCTGTTTACGCGCCTAATCGTATTGGAACAAAAAAGCGTCGAGCGCGTATTGGTCG
TAACCTTTACCAAAGCCGCCACCGCCGAGCTGAAAACACGCCTGCGCGCACGTTTGGACGATGTGTTACAAGTTTTAGAA
AGCAAAGGAATTGCCAAACTTGGAGACGACACGCTTTCAGACGGCATCGCCGCCTACTGCGCCGAACACCACGAAGGCGA
CACCTTCCTGCCCGAACTCTTAAAACAGGCTTTGCAAAAAGAGGGCCGGACGCGTCTGATTGTCCGCCTCAAGGCCGCCA
TCGGGCAATTCGACAACGCCGCCATCTATACCATCCACGGCTTCTGCCAGCGCATCCTGCGCGACTACGCCTTCCTGTGC
CAAGCACCGTTCGATGTCGAACTGACCGAAGAAGACGGCGACCGCCTGCTTATCCCGGCGCAAGATTTTTGGCGGGAACG
CGTCAGCAATGATCCGGTGCTTGCCGCATTGGCGTTTAAACGCAAAGCTGTGCCGCAAACCGTCCTTGCCCAAATTTCGC
GCTATCTTTCCCGCCCGTACCTGAATTTCCGCCGTCCGCAGGCGGATTTGAAACAGGCGCAGCGCAACGCCGAAACCTCA
TGGCAAACCATCTGCCGCCTGCTGCCAGAACTGGAAGCCGGCTTTTGGCGCATTCATCCCGACCTCAACGGCAACAGTTA
CCGCAAAAACAGCTTCGGCAACCTTTTTAAAGAACTGGCACAAAAATCCGCCGCCGGACAACTGCCCTTTCTGGACAAAG
ACACACACGACAGACTCTTGAAACTTGCGTCCGACAAACTCGAAGCCGGACTGAAAAAAGGCAAAACGCCCGATGCGGCA
GTATTTGCCGAATTGCAGAAACTGGCAGACTTCGGGCGCGATTTGAACGCACTCGAAGAAGCGGAAGAAGCAACAATGAT
CCGGCTGCAACTGGATTTAATCGAATACCTCAACCGCAGCCTTGCCGAGATGAAAAAATCGCGCCGCGAACGCGGTTTCG
ACGACCTGCTGCTCGATGTCCACACCGCGCTGACCGACAATCCGCACGCCGAAACCCTCGCCCGCGCCGTTGCCGAAAAC
TGGGAAACCGCGCTGATCGACGAGTTCCAAGACACCGACCCGCTGCAATACGAAATCTTCCAAAAAATCTTCATCGCCCA
AAACCGCCCGCTGTTTCTGGTCGGCGATCCCAAACAGGCGATTTACAGCTTTCGCGGAGCGGACATTTACGCCTACCTTC
AGGCAGCGGAAGACGCGCGGCACCGCTACACGCTCGCCACCAACTACCGCAGCCACGCCGCGCTTATCGGCAGCATAGGC
GCACTGTTCCGCCTCAAAGAACGCCCGTTCGTTTTGGAAAACATCGGCTATTCGGAAGTCGGTGCGGCGCGTGCCGAAAG
CAGATTGTCGCCCAAACGTCCTGCCGTACAGGTTCGTTGGCTGCACGAAAACGACAATGAAAAAGCCAACAAAGACGTTT
TGCGCCGACGTGCCGCCGACTATTGCGCCGACGAAATCGCCCACGCGCTCAACGAAGCCGCCGGAGGCCGTCTGAATTTC
AAAGGCTGCCCGTTGCAGTCGGGCGATATTGCCGTGCTGGTACGCACGCACAACGAGGCGGTGATGGTTTCCGCCGCCCT
GAAAAAACGGCAGGTGCAAAGCGTCCTGCTTTCGCGCGAATCCGTGTTCGCCTCGCCCGAAGCCGCCGCCCTGTCCGCAC
TCATCGGCTTCTGGCTCGAACCGCGCCGCGCCGGAACGCTGCGCTTTGTCCTGACAAGCAGCATATTCGGCTATAACGCG
CAGCAATTGCACGACTTCAACCAAAACGAAAGCGAGATTTTGCATTGGGCGGAATCTGCCCGAACCGCGCTCGACAACTG
GAATCAATACGGCATTTTCGCCGCTATGCAGCAATTTTCCCAAACACACGGCATCGAAACACGCCTCTTAAGCCGGAACA
ACGGGCGCAGCCTGACCAACTATTTCCAACTGCTCGAACTGCTTGCCGCCGAAGACGCGCAAAACCGCAACCCCGCCGCG
CTGCACAAATGGCTGCGCGACCAAATCAGCCTGGCCGGCAACAACGGCGGCGACAACCGCGCCATCCGTCTGGAAAGCGA
CGAAGATTTGGTCAAAATCGTTACCATGCACGCCTCGAAAGGTTTGCAGTATCCGCTGGTGTACTGCCCGTTTGCGTGGG
ACGCGCAAGATACCGGGCCGTCCGACTGGCAAATCCTCCACCAAAGCGCAAACCGAACCGAACTGTTGGCAAAGGCGCAA
CTGTCGGAAGACGAACAGAAGCAACACGCCGACGAAGAAATGGCGGAACGCCTGCGCCTGCTTTATGTCGCACTGACGCG
TGCCGAGGAACAGCTCAACATCTACGCCGCATACTCCACCAATACCGCCGACAACCCCCTCGCCTACCTAATTGAAGGCT
TGCCGCAAGACAGCCGCGAAACCGTCCGCTGTGCCTATGCGTGTGAAAAAGACGGCATCGCGATGCTCAAACGCAACTGG
CAGCGTTTGACGGACAACGCCCCTTCCGGCACGGATTTCGCCTTCACAGAAGATGTGCCGCCCCCTGCCGTATATTGCGG
CAATGCCGGTCAAACCGCCGAATTTGCCGCAAACAGCATTCCCGAACGCGGATTCCGATTTGTCCGCCACACCAGCTTTA
CCGCCTTAAGCCGCCATACCCAAACGCCCGACGGCGGGGAAGAAGATGCCTGCCCGTCCTTGGATGCCGCCGAAACCTCG
GTGCCGGCGATGCCGTCTGAAACGCCGACGGCTTCAGACGGCATATCGATACACAACTTCCCGAAAGGCACGCAGGCGGG
GCTGTGCCTGCACGAAATTCTTGAAGATTTCAAATTCGGACAAGCAGCCGCCAGACAGGAAACCCTCATTGCCGACAAGC
TGAAAAAATACGGATTTGAAGAAATATGGCTGCCCGCCGTTGCCGAAATGGCGGAAGCCTGCCAGAAAACGCCGCTGACG
GGGGCATACGGTCTGTCCGACATCCCGCCCGAGTGCCGCTGTCCCGAAATGGGCTTTACCCTCCACACCGAAGACTTCGG
CCTCAAACGGCTGCGCGACTGGTTTGCCCGCGACGATGTCCGGCTGCCCGAAGTCTGCCGTGCCGCCGCCGAAACGCTAG
ACTTCCACACCGTCAACGGCTTTTTAAACGGCTTTATCGATATGGTCTGCCAAGACCCCGACGGCAATATCTGCGTCATC
GACTACAAGTCGAACCACCTCGGCGCGGACGCATCCGCCTACACGCAACAGGCGATGGACGAAGCCGTCACGCACCACCA
CTATTACCTTCAGGCGCTGATTTACGCCGTTGCCGCCGCACGCTACTTCAAACTGCGCGGACAACCGCCCGCCGCCGTTT
CCGTCCGCTACCTGTTTTTGCGCGGATTGGATGGCAAAGGCGGCGGCGTTTGGCGTTGGGACATAGATGCCGCCGCTTTG
GAACAGATAAAATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(744-835)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(15-458)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1070-1182)

UvrD-like helicase C-terminal domain (UvrD_C)

(463-651)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

94.518

100

0.945

Multiple sequence alignment