Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NMBM01240355_RS04290 Genome accession   NC_017517
Coordinates   837645..839024 (+) Length   459 a.a.
NCBI ID   WP_014581901.1    Uniprot ID   -
Organism   Neisseria meningitidis M01-240355     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 832645..844024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM01240355_RS04270 (NMBM01240355_0779) - 833020..833781 (+) 762 WP_002223909.1 uroporphyrinogen-III synthase -
  NMBM01240355_RS04275 (NMBM01240355_0780) - 833856..835103 (+) 1248 WP_014581898.1 uroporphyrinogen-III C-methyltransferase -
  NMBM01240355_RS04280 (NMBM01240355_0781) - 835100..836317 (+) 1218 WP_014581899.1 heme biosynthesis protein HemY -
  NMBM01240355_RS04285 (NMBM01240355_0782) hemE 836392..837456 (+) 1065 WP_014581900.1 uroporphyrinogen decarboxylase -
  NMBM01240355_RS04290 (NMBM01240355_0783) radA 837645..839024 (+) 1380 WP_014581901.1 DNA repair protein RadA Machinery gene
  NMBM01240355_RS04295 (NMBM01240355_0784) - 839300..839779 (-) 480 WP_002239618.1 DUF302 domain-containing protein -
  NMBM01240355_RS04300 (NMBM01240355_0785) - 839904..840263 (-) 360 WP_014581902.1 rhodanese-like domain-containing protein -
  NMBM01240355_RS04305 (NMBM01240355_0786) recB 840302..843916 (-) 3615 WP_014581903.1 exodeoxyribonuclease V subunit beta Machinery gene

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49623.11 Da        Isoelectric Point: 7.3293

>NTDB_id=48101 NMBM01240355_RS04290 WP_014581901.1 837645..839024(+) (radA) [Neisseria meningitidis M01-240355]
MAKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSTVQSLSSVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTITKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYGVSSLQEAIDICRDSRE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=48101 NMBM01240355_RS04290 WP_014581901.1 837645..839024(+) (radA) [Neisseria meningitidis M01-240355]
ATGGCAAAAACGCTTAAAACCCTTTACCAATGCACCGAATGCGGCGGCACTTCCCCGAAATGGCAGGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACACTTCAGGAAAGCTTGGCCGCGCCCGAGCCGAAAAACGCCCGCTTCCAATCTTGGGCGGCGG
ATACCTCGACCGTCCAATCCCTCTCCTCCGTGACCGCCACCGAAGTGCCGCGCAATCCGACCGGCATGGGCGAACTCGAC
CGCGTATTGGGCGGTGGTTTGGTCGATGGTGCGGTCATCCTGCTCGGCGGCGACCCCGGCATCGGCAAATCCACGCTGCT
GTTGCAAACCATCACCAAAATGGCACAAAGCCGCAAAGTGCTGTACGTTTCCGGTGAAGAATCCGCCCAACAAGTCGCCT
TGCGTGCGCAACGTTTGGAACTGCCCACAGAAGGCGTGAACCTGCTTGCCGAAATCCGCATGGAAGCGATTCAGACGGCC
TTGAAACAACACCAGCCCGAAGTCGTGGTTATCGATTCCATCCAAACCATGTATTCCGACCAAATCACTTCCGCCCCCGG
CTCCGTGTCGCAGGTGCGCGAATGTGCCGCCCAACTGACGCGCATGGCGAAACAAATGGGCATCGCCATGATACTGGTCG
GACACGTGACCAAAGACGGCGCGATTGCCGGCCCGCGCGTATTGGAGCATATGGTCGATACCGTGCTGTATTTCGAGGGC
GACCAGCATTCTAATTATCGAATGATACGCGCCATCAAAAACCGTTTCGGCGCGGCAAACGAATTGGGCGTGTTCGCTAT
GACCGAAAACGGTTTGAAAGGCGTGTCCAACCCGTCCGCCATCTTCCTCGCCAGCTACCGCGACGACACGCCCGGTTCGT
GCGTTTTGGTTACACAGGAAGGCAGCCGCCCGCTTTTGGTCGAAATTCAGGCATTGGTCGATGACGCGCACGGCTTCACC
CCCAAACGCCTCACCGTCGGACTGGAACAAAACCGCCTTGCGATGCTGCTTGCCGTATTAAACCGCCACGGCGGCATTGC
CTGTTTCGACCAAGACGTGTTTCTCAATGCCGTCGGCGGCGTCAAAATTGGCGAACCCGCCGCCGACCTTGCCGTCATCC
TTGCCATGCTCTCCAGCTTCCGCAACCGCCCCATGCCCGAAAAAACCGTGGTTTTCGGCGAAATCGGCTTAAGCGGCGAA
GTCCGCCCCGTCGCACGCGGACAAGAGCGGCTCAAAGAGGCGGAAAAGCTCGGCTTTAAACGCGCCATCGTCCCAAAAGC
CAATATGCCGCGCAACGCCAAAGAGTTTCCGAACCTGAAAATCTACGGCGTTTCGAGTTTGCAGGAAGCCATCGATATTT
GCCGTGACAGCAGGGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(80-220)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.11

99.129

0.497
  radA Streptococcus mitis NCTC 12261

47.894

98.257

0.471
  radA Streptococcus pneumoniae Rx1

47.566

98.475

0.468
  radA Streptococcus pneumoniae D39

47.566

98.475

0.468
  radA Streptococcus pneumoniae R6

47.566

98.475

0.468
  radA Streptococcus pneumoniae TIGR4

47.566

98.475

0.468
  radA Streptococcus mitis SK321

47.45

98.257

0.466

Multiple sequence alignment