Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   J6M00_RS04245 Genome accession   NZ_CP072188
Coordinates   844938..846728 (+) Length   596 a.a.
NCBI ID   WP_015345294.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain 20190121E1-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 839938..851728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6M00_RS04215 (J6M00_04215) - 840124..840636 (+) 513 WP_064970462.1 NUDIX domain-containing protein -
  J6M00_RS04220 (J6M00_04220) - 840715..841221 (+) 507 WP_064970461.1 ferritin -
  J6M00_RS04225 (J6M00_04225) ruvB 841385..842407 (+) 1023 WP_004916525.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  J6M00_RS04230 (J6M00_04230) - 842444..843310 (+) 867 WP_004916523.1 MBL fold metallo-hydrolase -
  J6M00_RS04235 (J6M00_04235) coaE 843326..843916 (+) 591 WP_004916520.1 dephospho-CoA kinase -
  J6M00_RS04240 (J6M00_04240) - 843929..844918 (+) 990 WP_004916518.1 cation diffusion facilitator family transporter -
  J6M00_RS04245 (J6M00_04245) uvrC 844938..846728 (+) 1791 WP_015345294.1 excinuclease ABC subunit UvrC Machinery gene
  J6M00_RS04250 (J6M00_04250) - 846718..847128 (-) 411 WP_154469134.1 VanZ family protein -
  J6M00_RS04255 (J6M00_04255) lnt 847186..848829 (+) 1644 WP_014937516.1 apolipoprotein N-acyltransferase -
  J6M00_RS04260 (J6M00_04260) - 848864..849862 (+) 999 WP_014937517.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 69188.93 Da        Isoelectric Point: 9.0407

>NTDB_id=481011 J6M00_RS04245 WP_015345294.1 844938..846728(+) (uvrC) [Riemerella anatipestifer strain 20190121E1-3]
MNETLELQLKTLPKEPGVYRYYDEAGQLLYVGKAKNLRNRVLSYFNKSQVGYKTKIMVKKIHRLEITIVPSEYDALLLEN
NLIKEHQPFYNIMMKDDKSFPWLCIKNEPFPRLFLTRKRIKDGSEYYGPYAKVKPARVLLETIKNLYKIRTCTLNLSEDR
IEKANYKVCLEYHIKNCEGPCEGLESEEDYEKKINAVRGIIKGDFRLAKAYLEEEMLKHASNLEFEKAQMVKEKLEFLED
YQVKHTVVNPSIDDVDVFGMVSDETAAYINYFKIRNGNIVQSYTSEFRKKLEESDEEILEEAVVAIRDKFQSESKEILLP
FHLGTEIPQVKLIVPKVGDKKRIVELSEKNAREYRLEKLKQIQIVDPDRHTNRIMAEMKTLLRLPEEPRHIEGFDNSNIQ
GTNPVSACVVFKDGKPSKKDYRIFHIKTVEGPNDFASMEEVIYRRYKRYLDEGESLPQLILIDGGKGQLSSAVKSLKKLD
LYGKISIIGIAKRLEELFFPNDPIPLYLDKTSETLKVLQRVRDEAHRFGVKHHRTRRTNSTIKSELEEIPGVGAKSIELL
LSKLKSVKRIKEASQETLEEILGKSKGSIVWQYFNG

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=481011 J6M00_RS04245 WP_015345294.1 844938..846728(+) (uvrC) [Riemerella anatipestifer strain 20190121E1-3]
GTGAATGAAACTTTAGAACTTCAGCTAAAAACTTTACCAAAAGAGCCTGGCGTTTACCGTTATTATGACGAAGCGGGGCA
ACTGCTCTATGTAGGGAAAGCCAAAAACCTTAGAAATAGGGTGCTATCTTACTTCAATAAAAGTCAAGTGGGTTATAAGA
CCAAAATTATGGTTAAAAAAATCCATCGCTTGGAGATTACCATAGTTCCTAGTGAATACGACGCCCTCCTTTTAGAAAAC
AACCTCATTAAGGAACATCAGCCTTTCTACAATATTATGATGAAAGACGACAAAAGTTTCCCTTGGCTGTGCATCAAAAA
TGAACCTTTCCCTAGGCTATTTCTTACCAGAAAACGCATTAAAGATGGCTCCGAATATTATGGTCCTTACGCTAAAGTAA
AACCCGCTAGAGTACTTTTAGAAACCATTAAAAACCTCTATAAAATCAGGACTTGTACACTTAATCTTTCTGAAGATAGG
ATAGAGAAAGCCAATTATAAAGTCTGTTTAGAATACCACATTAAAAACTGCGAAGGTCCTTGCGAAGGTCTGGAAAGTGA
GGAAGATTACGAAAAGAAAATCAATGCTGTAAGAGGAATTATAAAAGGAGATTTCCGTTTGGCAAAAGCCTACTTAGAAG
AGGAGATGCTAAAACACGCCTCCAACCTAGAGTTTGAAAAAGCTCAAATGGTAAAGGAAAAATTGGAGTTTTTGGAAGAT
TATCAGGTTAAACACACTGTGGTTAATCCTAGTATAGATGATGTAGATGTATTTGGTATGGTGAGTGATGAAACGGCGGC
TTACATCAATTATTTTAAAATCAGAAATGGAAATATCGTTCAAAGTTATACTTCCGAATTCAGAAAAAAACTAGAAGAAA
GCGACGAAGAAATACTAGAAGAAGCTGTAGTTGCAATTAGAGATAAATTTCAGTCTGAATCTAAGGAAATATTACTACCA
TTCCATTTAGGCACCGAAATTCCTCAAGTGAAACTCATCGTTCCAAAGGTGGGCGACAAAAAGAGAATTGTAGAACTTTC
CGAAAAAAATGCGAGAGAATATCGTCTAGAAAAACTAAAGCAAATCCAAATTGTAGACCCTGACCGCCATACCAACCGCA
TTATGGCAGAAATGAAAACACTTCTTAGGCTTCCAGAAGAGCCAAGACACATTGAAGGCTTTGATAATTCTAATATTCAG
GGGACTAACCCTGTATCTGCCTGTGTCGTCTTTAAAGACGGTAAACCAAGCAAGAAGGATTATCGTATTTTCCATATCAA
GACCGTAGAAGGTCCTAACGACTTTGCTTCTATGGAAGAAGTGATTTACCGAAGATATAAAAGATATTTAGATGAAGGCG
AGTCTCTACCTCAACTGATTTTGATAGACGGCGGTAAGGGGCAGCTAAGCTCTGCCGTTAAAAGTTTAAAAAAGTTAGAT
TTATATGGTAAAATCTCCATCATAGGTATTGCCAAAAGGTTGGAAGAGCTATTTTTCCCTAACGACCCTATTCCTTTATA
TTTAGACAAAACTTCAGAAACACTTAAGGTCTTACAAAGAGTGAGAGACGAAGCCCACCGTTTTGGAGTAAAGCACCACC
GTACTAGAAGAACCAACAGCACCATAAAATCAGAACTAGAAGAAATCCCAGGTGTTGGTGCTAAATCCATAGAGCTATTG
CTAAGTAAACTAAAATCAGTAAAGCGTATTAAAGAAGCCTCACAGGAAACTTTAGAGGAAATTTTGGGCAAGTCTAAAGG
CAGTATAGTATGGCAGTATTTTAATGGATAG

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(380-530)

GIY-YIG catalytic domain (GIY-YIG)

(16-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

37.627

98.993

0.372
  uvrC Streptococcus pneumoniae D39

37.627

98.993

0.372
  uvrC Streptococcus pneumoniae TIGR4

37.458

98.993

0.371