Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   J6L78_RS04225 Genome accession   NZ_CP072185
Coordinates   894192..894776 (+) Length   194 a.a.
NCBI ID   WP_004918099.1    Uniprot ID   E4TBU9
Organism   Riemerella anatipestifer strain 20190109E1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 889192..899776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6L78_RS04215 (J6L78_04220) - 889644..892574 (+) 2931 WP_214202756.1 SusC/RagA family TonB-linked outer membrane protein -
  J6L78_RS04220 (J6L78_04225) - 892589..894025 (+) 1437 WP_004918097.1 RagB/SusD family nutrient uptake outer membrane protein -
  J6L78_RS04225 (J6L78_04230) ruvA 894192..894776 (+) 585 WP_004918099.1 Holliday junction branch migration protein RuvA Machinery gene

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21407.96 Da        Isoelectric Point: 6.8856

>NTDB_id=480928 J6L78_RS04225 WP_004918099.1 894192..894776(+) (ruvA) [Riemerella anatipestifer strain 20190109E1-1]
MIYSLRGIVQELSPTHLIIETGGVGYFVSVSVNTSKHFSIGKESLIYTQQIIREDAHLLYGFSELKEKEMFNLLISVNGV
GPASAMIMLSSLELREIAQAILSSNSAVLQKVKGIGTKTAQRIIIDLKDKVLHFGADESDISTVIDNKVKEESLSALEVL
GIPKKMSEKLANKILKQNPEIQTEDLVKQILKNI

Nucleotide


Download         Length: 585 bp        

>NTDB_id=480928 J6L78_RS04225 WP_004918099.1 894192..894776(+) (ruvA) [Riemerella anatipestifer strain 20190109E1-1]
ATGATTTACTCTCTACGAGGTATCGTTCAGGAGCTTAGCCCAACCCATTTAATTATAGAAACTGGTGGTGTAGGCTACTT
TGTAAGCGTTAGTGTAAACACTTCTAAACACTTTTCCATTGGGAAAGAATCTTTAATCTACACACAACAAATCATTCGAG
AAGACGCTCACTTATTGTACGGTTTTTCGGAGCTCAAAGAGAAAGAAATGTTTAACCTACTTATTTCTGTAAATGGTGTA
GGACCAGCCTCTGCTATGATTATGCTTTCCTCACTAGAATTAAGAGAAATAGCACAAGCCATACTCTCTAGCAATAGTGC
TGTATTACAAAAAGTAAAAGGTATAGGCACCAAAACTGCACAACGAATTATCATTGATTTAAAAGATAAAGTATTGCATT
TTGGAGCAGATGAATCTGATATTTCCACCGTTATTGATAATAAAGTAAAAGAAGAATCGTTATCTGCATTAGAAGTTTTA
GGAATCCCTAAAAAAATGTCAGAAAAGTTAGCCAACAAAATTTTGAAACAAAATCCAGAAATTCAAACGGAAGATTTAGT
AAAACAAATTTTGAAAAACATTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-129)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(149-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E4TBU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

34.804

100

0.366
  ruvA Helicobacter pylori 26695

36.41

100

0.366