Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   NMBM01240355_RS01575 Genome accession   NC_017517
Coordinates   291553..292251 (+) Length   232 a.a.
NCBI ID   WP_002243893.1    Uniprot ID   -
Organism   Neisseria meningitidis M01-240355     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 286553..297251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM01240355_RS01560 (NMBM01240355_0280) trpC 287637..288419 (-) 783 WP_002243890.1 indole-3-glycerol phosphate synthase TrpC -
  NMBM01240355_RS01565 (NMBM01240355_0281) - 288470..289426 (-) 957 WP_014581745.1 YheT family hydrolase -
  NMBM01240355_RS16185 - 289423..289554 (-) 132 WP_255304562.1 hypothetical protein -
  NMBM01240355_RS01570 (NMBM01240355_0282) murJ 289558..291096 (-) 1539 WP_014581746.1 murein biosynthesis integral membrane protein MurJ -
  NMBM01240355_RS01575 (NMBM01240355_0283) dsbA1 291553..292251 (+) 699 WP_002243893.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  NMBM01240355_RS01580 (NMBM01240355_0284) amgK 292308..293312 (-) 1005 WP_002243894.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  NMBM01240355_RS01585 (NMBM01240355_0285) - 293382..295790 (+) 2409 WP_041423342.1 LPS-assembly protein LptD -
  NMBM01240355_RS01590 (NMBM01240355_0286) - 295895..296992 (+) 1098 WP_041423343.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25286.89 Da        Isoelectric Point: 5.8890

>NTDB_id=48088 NMBM01240355_RS01575 WP_002243893.1 291553..292251(+) (dsbA1) [Neisseria meningitidis M01-240355]
MKSRHLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAH
LEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAAESKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTA
FDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMHTIDLLADKVREEQKAAQ

Nucleotide


Download         Length: 699 bp        

>NTDB_id=48088 NMBM01240355_RS01575 WP_002243893.1 291553..292251(+) (dsbA1) [Neisseria meningitidis M01-240355]
ATGAAATCCAGACACCTCGCCCTCGGCGTTGCCGCCCTGTTCGCCCTTGCCGCGTGCGACAGCAAAGTCCAAACCAGCGT
CCCCGCCGACAGCGCGCCTGCCGCTTCGGCAGCCGCCGCCCCGGCAGGGCTGGTCGAAGGGCAAAACTATACCGTCCTTG
CCAACCCGATTCCCCAACAGCAGGCAGGCAAAGTCGAAGTCCTTGAGTTTTTCGGCTATTTCTGTCCGCACTGCGCCCAC
CTCGAACCTGTTTTAAGCAAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTACCGAACACGTCGTCTGGCAGAA
AGAAATGCTGACGCTGGCCCGCCTTGCCGCCGCCGTCGATATGGCTGCCGCCGAAAGCAAAGATGTGGCGAACAGCCATA
TTTTCGATGCGATGGTCAACCAAAAAATCAAGCTGCAAAATCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAAACCGCC
TTTGACGGCAAAAAAGTCCTTGCCGCCTACGAGTCCCCCGAAAGCCAGGCGCGCGCCGACAAAATGCAGGAGCTGACCGA
AACCTTCCAAATCGACGGTACGCCCACGGTTATCGTCGGCGGCAAATATAAAGTCGAATTTGCCGACTGGGAGTCCGGTA
TGCACACCATCGACCTTTTGGCGGACAAAGTACGCGAAGAACAAAAAGCCGCGCAGTAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(63-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

99.138

100

0.991
  dsbA2 Neisseria meningitidis MC58

76.19

81.466

0.621

Multiple sequence alignment