Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   J5X95_RS16810 Genome accession   NZ_CP072120
Coordinates   3317573..3318595 (+) Length   340 a.a.
NCBI ID   WP_007409697.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GKT04     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3312573..3323595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X95_RS16775 (J5X95_16775) - 3312932..3313171 (+) 240 WP_003154475.1 YlbE-like family protein -
  J5X95_RS16780 (J5X95_16780) ylbF 3313242..3313691 (+) 450 WP_003154472.1 YlbF family regulator Regulator
  J5X95_RS16785 (J5X95_16785) - 3313750..3314022 (+) 273 WP_003154470.1 YlbG family protein -
  J5X95_RS16790 (J5X95_16790) rsmD 3314322..3314876 (+) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  J5X95_RS16795 (J5X95_16795) coaD 3314881..3315363 (+) 483 WP_007409694.1 pantetheine-phosphate adenylyltransferase -
  J5X95_RS16800 (J5X95_16800) ylbJ 3315382..3316608 (-) 1227 WP_094031688.1 sporulation integral membrane protein YlbJ -
  J5X95_RS16805 (J5X95_16805) - 3316788..3317567 (+) 780 WP_007409696.1 patatin family protein -
  J5X95_RS16810 (J5X95_16810) sepM 3317573..3318595 (+) 1023 WP_007409697.1 SepM family pheromone-processing serine protease Regulator
  J5X95_RS16815 (J5X95_16815) - 3318614..3319861 (-) 1248 WP_094031689.1 nucleotidyltransferase -
  J5X95_RS16820 (J5X95_16820) - 3320070..3320588 (+) 519 WP_012117495.1 YceD family protein -
  J5X95_RS16825 (J5X95_16825) rpmF 3320610..3320789 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  J5X95_RS16830 (J5X95_16830) gerR 3320949..3321524 (+) 576 WP_012117496.1 sporulation-specific transcriptional regulator GerR -
  J5X95_RS16835 (J5X95_16835) - 3321564..3322046 (-) 483 WP_007409700.1 N-acetyltransferase -
  J5X95_RS16840 (J5X95_16840) - 3322209..3323090 (+) 882 WP_072589072.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37448.99 Da        Isoelectric Point: 7.3837

>NTDB_id=480810 J5X95_RS16810 WP_007409697.1 3317573..3318595(+) (sepM) [Bacillus amyloliquefaciens strain GKT04]
MKAKHFRWVFIILILLIAVTFIKLPYYITQPGEASELRPLIKVDGGYPEKGSLSLMTVKVGPANPYTYLWAKVHPYEEIV
PDESIKEEGESDSDYMKRQLQMMKSSQENAVIAAYQKAGKQVKYSFNGIYASSVVSDMPAKGKIEVGDKIISADGKTYES
AEKLIDYISSKKAGEKVTFHIERDTKEKTVDIVLKSFPDDPKRAGIGVALYTDRNVKVKPDLHFSIENIGGPSAGLMMSL
EIYNQLTKPDETKGYNIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGAENSDYKNAVKTAKAIKSDMKIV
PVDTMQDALDYLDQLKVKST

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=480810 J5X95_RS16810 WP_007409697.1 3317573..3318595(+) (sepM) [Bacillus amyloliquefaciens strain GKT04]
ATGAAAGCAAAACATTTTCGCTGGGTGTTTATCATCCTGATCTTATTAATCGCTGTTACATTTATTAAGCTTCCGTATTA
CATCACACAGCCGGGAGAAGCATCAGAGCTGAGACCGCTGATTAAGGTGGACGGAGGCTATCCTGAAAAAGGAAGCCTTT
CCTTGATGACTGTCAAAGTAGGCCCCGCCAATCCGTATACATATCTTTGGGCGAAAGTGCATCCTTACGAAGAAATCGTC
CCTGATGAAAGCATAAAAGAAGAGGGCGAATCGGACTCGGATTATATGAAGCGCCAGCTGCAAATGATGAAAAGCTCCCA
AGAAAACGCGGTCATTGCCGCTTATCAAAAAGCCGGGAAACAGGTGAAATACTCATTTAACGGCATTTATGCCAGTTCAG
TCGTCTCTGACATGCCGGCAAAAGGAAAAATAGAGGTCGGTGATAAAATCATCAGCGCGGACGGGAAAACATACGAATCC
GCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGGGAAAAAGTAACGTTTCACATTGAACGGGACACGAAAGA
AAAGACCGTTGACATTGTGCTGAAATCATTCCCGGACGACCCGAAAAGAGCGGGAATCGGTGTCGCATTATATACTGACC
GGAACGTGAAAGTGAAGCCGGATCTTCATTTCAGCATTGAAAACATCGGCGGGCCTTCTGCGGGTCTCATGATGTCTTTA
GAAATTTACAACCAGCTGACAAAACCTGACGAAACAAAAGGCTATAATATAGCCGGAACGGGGACAATCGACGTGGACGG
CAAAGTCGGACCGATCGGCGGAATCGATCAGAAAGTCGTCGCCGCAGACAAAGCGGGAAAAGATATTTTCTTTGCGCCGA
ATCAAAACGGAGCTGAAAATTCTGATTACAAAAATGCGGTAAAAACGGCGAAAGCAATCAAGTCCGATATGAAAATCGTC
CCTGTCGACACCATGCAGGACGCACTTGACTATTTGGATCAGCTGAAAGTAAAAAGCACCTGA

Domains

Predicted by InterProScan.

PDZ domain (PDZ_2)

(127-193)

Peptidase family M50 (Peptidase_M50)

(99-218)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(230-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

38.953

100

0.394