Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   J5X95_RS16780 Genome accession   NZ_CP072120
Coordinates   3313242..3313691 (+) Length   149 a.a.
NCBI ID   WP_003154472.1    Uniprot ID   A7Z4C2
Organism   Bacillus amyloliquefaciens strain GKT04     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3308242..3318691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X95_RS16740 (J5X95_16740) ctaE 3308360..3308983 (+) 624 WP_003154482.1 cytochrome c oxidase subunit III -
  J5X95_RS16745 (J5X95_16745) ctaF 3308986..3309318 (+) 333 WP_007409686.1 cytochrome c oxidase subunit IVB -
  J5X95_RS16750 (J5X95_16750) ctaG 3309343..3310227 (+) 885 WP_020953993.1 cytochrome c oxidase assembly factor CtaG -
  J5X95_RS16755 (J5X95_16755) - 3310262..3310621 (-) 360 WP_007409688.1 YugN family protein -
  J5X95_RS16760 (J5X95_16760) - 3310762..3311205 (+) 444 WP_017417724.1 CBS domain-containing protein -
  J5X95_RS16765 (J5X95_16765) - 3311290..3312330 (+) 1041 WP_007409690.1 CAP domain-containing protein -
  J5X95_RS16770 (J5X95_16770) - 3312506..3312916 (+) 411 WP_025284691.1 YlbD family protein -
  J5X95_RS16775 (J5X95_16775) - 3312932..3313171 (+) 240 WP_003154475.1 YlbE-like family protein -
  J5X95_RS16780 (J5X95_16780) ylbF 3313242..3313691 (+) 450 WP_003154472.1 YlbF family regulator Regulator
  J5X95_RS16785 (J5X95_16785) - 3313750..3314022 (+) 273 WP_003154470.1 YlbG family protein -
  J5X95_RS16790 (J5X95_16790) rsmD 3314322..3314876 (+) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  J5X95_RS16795 (J5X95_16795) coaD 3314881..3315363 (+) 483 WP_007409694.1 pantetheine-phosphate adenylyltransferase -
  J5X95_RS16800 (J5X95_16800) ylbJ 3315382..3316608 (-) 1227 WP_094031688.1 sporulation integral membrane protein YlbJ -
  J5X95_RS16805 (J5X95_16805) - 3316788..3317567 (+) 780 WP_007409696.1 patatin family protein -
  J5X95_RS16810 (J5X95_16810) sepM 3317573..3318595 (+) 1023 WP_007409697.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16777.86 Da        Isoelectric Point: 4.8089

>NTDB_id=480809 J5X95_RS16780 WP_003154472.1 3313242..3313691(+) (ylbF) [Bacillus amyloliquefaciens strain GKT04]
MYATIESVKLQSEAEQLAGMILQSETAENYRDCYKRLREDEEAGRIIRSFMSVKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=480809 J5X95_RS16780 WP_003154472.1 3313242..3313691(+) (ylbF) [Bacillus amyloliquefaciens strain GKT04]
ATGTATGCAACAATTGAGTCCGTCAAGCTTCAAAGTGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCGTGAAGATGAAGAGGCAGGGCGGATCATTCGTTCTTTTATGAGCGTTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATACCATCCTGATTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAACTGGATTTAAACGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTTCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGGTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

87.919

100

0.879