Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   NMBH4476_RS08280 Genome accession   NC_017516
Coordinates   1569618..1570421 (+) Length   267 a.a.
NCBI ID   WP_002244053.1    Uniprot ID   Q9K0B1
Organism   Neisseria meningitidis H44/76     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1564618..1575421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBH4476_RS08260 (NMBH4476_1482) lptE 1565525..1566004 (-) 480 WP_002217671.1 LPS assembly lipoprotein LptE -
  NMBH4476_RS08265 (NMBH4476_1483) pgeF 1566056..1566835 (-) 780 WP_002244057.1 peptidoglycan editing factor PgeF -
  NMBH4476_RS15880 - 1567002..1567175 (+) 174 Protein_1526 IS5/IS1182 family transposase -
  NMBH4476_RS08270 (NMBH4476_1484) - 1567395..1568342 (+) 948 WP_002244055.1 bile acid:sodium symporter family protein -
  NMBH4476_RS08275 (NMBH4476_1485) rluD 1568495..1569619 (-) 1125 WP_002247551.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NMBH4476_RS08280 (NMBH4476_1486) comL 1569618..1570421 (+) 804 WP_002244053.1 outer membrane protein assembly factor BamD Machinery gene
  NMBH4476_RS08285 (NMBH4476_1487) comA 1570649..1572868 (-) 2220 WP_153063205.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NMBH4476_RS15885 - 1572950..1573141 (+) 192 Protein_1531 hypothetical protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30915.00 Da        Isoelectric Point: 9.3369

>NTDB_id=48063 NMBH4476_RS08280 WP_002244053.1 1569618..1570421(+) (comL) [Neisseria meningitidis H44/76]
MKKILLTVSLGLALSACATQGTVDKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHAQQSQLDTAY
AYYKDDEKDKALAAIDRFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESLAILELAYKKLDKPRLAADTRRV
LETNFPKSPFLKQPWRSDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=48063 NMBH4476_RS08280 WP_002244053.1 1569618..1570421(+) (comL) [Neisseria meningitidis H44/76]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGTAGATAAAGATGC
CCAGATTACCCAAGACTGGAGTGTGGAAAAACTCTATGCCGAAGCCCAGGACGAGCTGAACAGCAGCAATTATACGCGAG
CTGTCAAATTATACGAAATCTTGGAATCGCGCTTCCCTACCAGCCGCCATGCCCAGCAATCCCAACTGGATACGGCATAC
GCCTACTATAAAGATGATGAGAAGGATAAGGCGCTGGCCGCCATTGACCGCTTCCGCCGCCTTCACCCTCAACACCCGAA
TATGGACTACGCGCTATACCTGCGCGGTTTGGTACTGTTCAACGAAGATCAATCTTTCTTGAACAAGCTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTATCAGGCCTTTGCGGAACTCGTCCAACGCTTCCCGAACAGC
AAATACGCCGCCGATGCGACCGCACGCATGGTCAAACTGGTCGATGCTTTGGGCGGCAATGAAATGTCGGTAGCGCGTTA
CTACATGAAACGCGGCGCATATATCGCCGCCGCCAACCGCGCCCAAAAAATTATCGGCAGCTATCAAAATACACGCTATG
TCGAAGAATCGCTCGCCATATTGGAACTTGCCTACAAGAAGTTGGACAAGCCCCGGCTTGCCGCCGATACGCGCCGCGTG
TTGGAAACCAACTTCCCGAAAAGCCCGTTCTTAAAGCAGCCGTGGCGATCTGACGATATGCCCTGGTGGCGTTACTGGCA
CTGA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9K0B1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

100

100

1
  comL Neisseria gonorrhoeae MS11

96.255

100

0.963

Multiple sequence alignment