Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   NMBH4476_RS02235 Genome accession   NC_017516
Coordinates   415465..416109 (+) Length   214 a.a.
NCBI ID   WP_002224916.1    Uniprot ID   -
Organism   Neisseria meningitidis H44/76     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 410465..421109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBH4476_RS02210 (NMBH4476_0395) putP 410654..412180 (-) 1527 WP_002224913.1 sodium/proline symporter PutP -
  NMBH4476_RS02220 (NMBH4476_0396) - 412663..412983 (+) 321 WP_002212476.1 accessory factor UbiK family protein -
  NMBH4476_RS02225 (NMBH4476_0397) comM 412997..414493 (+) 1497 WP_002224914.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NMBH4476_RS02230 (NMBH4476_0398) ftsN 414599..415462 (+) 864 WP_002243994.1 cell division protein FtsN -
  NMBH4476_RS02235 (NMBH4476_0399) dsbA1 415465..416109 (+) 645 WP_002224916.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  NMBH4476_RS02240 (NMBH4476_0400) - 416142..416963 (+) 822 WP_002222025.1 undecaprenyl-diphosphate phosphatase -
  NMBH4476_RS02255 (NMBH4476_0403) - 417536..418747 (-) 1212 WP_010980791.1 class I SAM-dependent methyltransferase -
  NMBH4476_RS02260 (NMBH4476_0404) mraZ 419026..419481 (+) 456 WP_002224918.1 division/cell wall cluster transcriptional repressor MraZ -
  NMBH4476_RS02265 (NMBH4476_0405) rsmH 419478..420464 (+) 987 WP_002224919.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  NMBH4476_RS02270 (NMBH4476_0406) ftsL 420461..420724 (+) 264 WP_002220363.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23983.98 Da        Isoelectric Point: 9.8294

>NTDB_id=48044 NMBH4476_RS02235 WP_002224916.1 415465..416109(+) (dsbA1) [Neisseria meningitidis H44/76]
MKLKHLLPLLLSAVLSAQAYALTEGEDYLVLDKPIPQEQSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEH
VVWQPEMLGLARMAAAVNLSGLKYQANPAVFKAVYEQKIRLENRSVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQK
LTEQYRIDSTPTVIVGGKYRVIFNNGFDGGVHTIKELVAKVREERKRQTPAVQK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=48044 NMBH4476_RS02235 WP_002224916.1 415465..416109(+) (dsbA1) [Neisseria meningitidis H44/76]
ATGAAGCTCAAACATCTGTTGCCGCTGCTGCTGTCGGCAGTGTTGTCCGCGCAGGCATATGCCCTGACGGAAGGGGAAGA
CTATCTTGTGTTGGATAAACCCATTCCTCAAGAACAGTCGGGTAAAATTGAGGTTTTGGAATTTTTCGGCTATTTCTGCG
TACATTGCCATCATTTCGATCCTTTGTTATTGAAACTGGGCAAGGCATTGCCGTCTGATGCCTATTTGAGGACGGAGCAC
GTGGTCTGGCAGCCTGAAATGCTCGGTTTGGCTAGGATGGCGGCTGCCGTCAATTTGTCGGGTTTGAAATATCAGGCAAA
CCCTGCTGTGTTTAAAGCAGTTTACGAACAAAAAATCCGCTTGGAAAACAGGTCGGTTGCCGGAAAATGGGCTTTGTCTC
AAAAAGGCTTTGACGGCAAAAAACTGATGCGCGCCTATGATTCCCCCGAAGCTGCCGCCGCCGCATTAAAAATGCAGAAA
CTGACGGAACAATACCGCATCGACAGCACGCCGACCGTTATTGTCGGCGGAAAATACCGCGTTATCTTCAATAACGGCTT
TGACGGCGGCGTTCATACGATTAAAGAATTGGTTGCCAAAGTCAGGGAAGAACGCAAGCGTCAGACCCCTGCTGTACAGA
AATAG

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(42-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

57.219

87.383

0.5
  dsbA2 Neisseria meningitidis MC58

51.613

86.916

0.449

Multiple sequence alignment