Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   HLB40_RS28385 Genome accession   NZ_CP061079
Coordinates   6385325..6385732 (-) Length   135 a.a.
NCBI ID   WP_009051308.1    Uniprot ID   A0AB33WTM4
Organism   Pseudomonas chlororaphis strain qlu-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6380325..6390732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLB40_RS28370 (HLB40_28370) - 6382204..6384267 (-) 2064 WP_009051306.1 methyl-accepting chemotaxis protein -
  HLB40_RS28375 (HLB40_28375) - 6384365..6384904 (-) 540 WP_016704857.1 chemotaxis protein CheW -
  HLB40_RS28380 (HLB40_28380) pilH 6384916..6385281 (-) 366 WP_007953328.1 twitching motility response regulator PilH -
  HLB40_RS28385 (HLB40_28385) pilG 6385325..6385732 (-) 408 WP_009051308.1 twitching motility response regulator PilG Regulator
  HLB40_RS28390 (HLB40_28390) gshB 6385969..6386943 (+) 975 WP_009051309.1 glutathione synthase -
  HLB40_RS28395 (HLB40_28395) - 6387094..6387993 (+) 900 WP_007929970.1 energy transducer TonB -
  HLB40_RS28400 (HLB40_28400) - 6388186..6388755 (+) 570 WP_007929972.1 YqgE/AlgH family protein -
  HLB40_RS28405 (HLB40_28405) ruvX 6388755..6389192 (+) 438 WP_009046019.1 Holliday junction resolvase RuvX -
  HLB40_RS28410 (HLB40_28410) pyrR 6389314..6389820 (+) 507 WP_007929976.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14755.09 Da        Isoelectric Point: 6.7123

>NTDB_id=480439 HLB40_RS28385 WP_009051308.1 6385325..6385732(-) (pilG) [Pseudomonas chlororaphis strain qlu-1]
MEQQSSALKVMVIDDSKTIRRTAETLLKNVGCEVITAVDGFESLAKIADNHPDIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAHVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=480439 HLB40_RS28385 WP_009051308.1 6385325..6385732(-) (pilG) [Pseudomonas chlororaphis strain qlu-1]
ATGGAACAGCAATCCAGCGCCCTCAAGGTGATGGTGATCGATGATTCGAAGACGATTCGCCGCACGGCAGAAACGCTGTT
GAAGAATGTGGGCTGTGAAGTCATCACCGCGGTCGACGGTTTCGAGTCCCTGGCCAAGATCGCCGACAACCACCCGGACA
TCATCTTCGTCGACATCATGATGCCGCGGCTCGATGGCTATCAGACCTGCGCACTGATCAAGAACAACAGCGCGTTCAAG
TCCACGCCGGTGATTATGCTGTCCTCCAAGGACGGTCTGTTCGACAAGGCCAAGGGTCGCATCGTCGGCTCTGACCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAGCTGCTGAGCGCGATCAAGGCCCATGTGCCGGGGTTCGCCGCAGTAGAACAAG
CACATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76.8

92.593

0.711
  vicR Streptococcus mutans UA159

41.27

93.333

0.385