Detailed information NTG0480435

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: HLB40_RS26000
• Genome accession: NZ_CP061079
• Coordinates: 5876203..5877531 (+)
• Length: 442 a.a.
• NCBI ID: WP_101283614.1
• Uniprot ID: A0AAP9VTY3
• Organism: Pseudomonas chlororaphis strain qlu-1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5871203..5882531

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HLB40_RS25980 (HLB40_25980)	pgeF	5872702..5873427 (-)	726	WP_009050932.1	peptidoglycan editing factor PgeF	-
HLB40_RS25985 (HLB40_25985)	rluD	5873424..5874386 (-)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
HLB40_RS25990 (HLB40_25990)	-	5874539..5875561 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
HLB40_RS25995 (HLB40_25995)	-	5875696..5875929 (+)	234	WP_007924721.1	PP0621 family protein	-
HLB40_RS26000 (HLB40_26000)	pilR	5876203..5877531 (+)	1329	WP_101283614.1	sigma-54-dependent transcriptional regulator	Regulator
HLB40_RS26005 (HLB40_26005)	thiO	5877528..5878628 (-)	1101	WP_101283616.1	glycine oxidase ThiO	-
HLB40_RS26010 (HLB40_26010)	-	5878683..5879084 (-)	402	WP_009050937.1	type IV pilin protein	-
HLB40_RS26015 (HLB40_26015)	-	5879098..5882166 (-)	3069	WP_101283618.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48857.32 Da
• Isoelectric Point: 9.3790

>NTDB_id=480435 HLB40_RS26000 WP_101283614.1 5876203..5877531(+) (pilR) [Pseudomonas chlororaphis strain qlu-1]
MSPQQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQRHRLRMPLA
ILSTCARQETAVRVLKAGAIDFLSKPVALARLRELLNGALPKSIPPKPVTGPLLGNSTAMHKLRGQIHKLAQSQASVYIS
GESGSGKELAARAIHDQGPRASQGFVPINCGAIPPELMESEFFGHRKGSFSGAVEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKTLQAEVHAGRFRQDLYYRLNVIELAVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENRQIEARDLQLTPNGAHPASAPSPAQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=480435 HLB40_RS26000 WP_101283614.1 5876203..5877531(+) (pilR) [Pseudomonas chlororaphis strain qlu-1]
ATGAGCCCACAGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAGCGCCATACCCGTAGCGCCCGCACCCTGGGTGAAGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGCACGGGGTTGGAATTACTCGAGCATATCCAGCGCCACCGGCTGCGAATGCCACTGGCC
ATCCTCAGCACCTGCGCCCGCCAGGAAACCGCGGTCCGGGTCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCCCGCTTGCGCGAGCTACTGAACGGCGCCCTGCCCAAATCGATACCACCGAAGCCTGTTACTGGCCCCTTGC
TGGGCAATTCGACCGCCATGCACAAACTGCGTGGACAGATCCACAAACTGGCCCAGAGTCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGCAGCGGCAAGGAACTGGCCGCCCGCGCGATCCACGACCAGGGACCACGGGCCAGCCAGGGCTTCGTGCC
GATCAACTGCGGGGCTATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGTGCCG
TCGAAGACAAACCCGGCCTGTTCCAGGCAGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCACTGGCA
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCGGTGCGCTGTGTCGGCGGACAGCAGGAGGTCCAGGTTGATGT
GCGCATTCTCTGCGCCACCCACAAGACGCTGCAGGCGGAAGTGCATGCCGGACGCTTTCGCCAGGATCTCTACTACCGCC
TCAACGTGATCGAACTGGCGGTGCCACCGCTACGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACAGCCATCCTCGAG
CGCCTGGCGCAGGGCAACGGCCAACAGTTGGCGCGGCTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAGCTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCAGATCGAAGCACGCGACC
TGCAACTGACACCAAACGGCGCACACCCGGCCAGCGCGCCCAGCCCGGCACAGGTGATCGACCTTGAAGGTTATCTGCAG
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Sigma-54 interaction domain (Sigma54_activat) (133-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.591	100	0.667
pilR	Acinetobacter baumannii strain A118	43.991	100	0.464