Detailed information    

insolico Bioinformatically predicted

Overview


Name   dsbA1   Type   Machinery gene
Locus tag   NMBH4476_RS01545 Genome accession   NC_017516
Coordinates   280956..281654 (+) Length   232 a.a.
NCBI ID   WP_002224844.1    Uniprot ID   Q9K189
Organism   Neisseria meningitidis H44/76     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 275956..286654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBH4476_RS01530 (NMBH4476_0270) trpC 277278..278060 (-) 783 WP_002221930.1 indole-3-glycerol phosphate synthase TrpC -
  NMBH4476_RS01535 (NMBH4476_0271) - 278111..279067 (-) 957 WP_009346054.1 YheT family hydrolase -
  NMBH4476_RS01540 (NMBH4476_0272) murJ 279200..280738 (-) 1539 WP_009346056.1 murein biosynthesis integral membrane protein MurJ -
  NMBH4476_RS01545 (NMBH4476_0273) dsbA1 280956..281654 (+) 699 WP_002224844.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  NMBH4476_RS01550 (NMBH4476_0274) amgK 281711..282715 (-) 1005 WP_002224845.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  NMBH4476_RS01555 (NMBH4476_0275) - 282785..285193 (+) 2409 WP_002243965.1 LPS-assembly protein LptD -
  NMBH4476_RS01560 (NMBH4476_0276) - 285298..286377 (+) 1080 WP_009346062.1 peptidylprolyl isomerase -

Sequence


Protein


Download         Length: 232 a.a.        Molecular weight: 25249.83 Da        Isoelectric Point: 5.6277

>NTDB_id=48038 NMBH4476_RS01545 WP_002224844.1 280956..281654(+) (dsbA1) [Neisseria meningitidis H44/76]
MKSRHLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAH
LEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTA
FDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAAQ

Nucleotide


Download         Length: 699 bp        

>NTDB_id=48038 NMBH4476_RS01545 WP_002224844.1 280956..281654(+) (dsbA1) [Neisseria meningitidis H44/76]
ATGAAATCCAGACACCTTGCCCTCGGCGTTGCCGCCCTGTTCGCCCTTGCCGCGTGCGACAGCAAAGTCCAAACCAGCGT
CCCCGCCGACAGCGCGCCTGCCGCTTCGGCAGCCGCCGCCCCGGCAGGGCTGGTCGAAGGGCAAAACTATACCGTCCTTG
CCAACCCGATTCCCCAACAGCAGGCAGGCAAAGTCGAAGTCCTTGAGTTTTTCGGCTATTTCTGTCCGCACTGCGCCCAC
CTCGAACCTGTTTTAAGCAAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTACCGAACACGTCGTCTGGCAGAA
AGAAATGCTGACGCTGGCACGCCTCGCCGCCGCCGTCGATATGGCTGCCGCCGACAGCAAAGATGTGGCGAACAGCCATA
TTTTCGATGCGATGGTCAACCAAAAAATCAAGCTGCAAAATCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAAACCGCC
TTTGACGGCAAAAAAGTCCTTGCCGCCTACGAGTCCCCCGAAAGCCAGGCGCGCGCCGACAAAATGCAGGAGCTGACCGA
AACCTTCCAAATCGACGGTACGCCCACGGTTATCGTCGGCGGTAAATATAAAGTTGAATTTGCCGACTGGGAGTCCGGTA
TGAACACCATCGACCTTTTGGCGGACAAAGTACGCGAAGAACAAAAAGCCGCGCAGTAA

Domains


Predicted by InterproScan.

(63-212)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  PDB 3A3T
  PDB 3DVW
  PDB 3HZ8

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

100

100

1

  dsbA2 Neisseria meningitidis MC58

76.19

81.466

0.621


Multiple sequence alignment