Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J5D26_RS03775 Genome accession   NZ_CP071985
Coordinates   815424..816944 (-) Length   506 a.a.
NCBI ID   WP_209508365.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5119     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 810424..821944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D26_RS07735 - 811456..811749 (-) 294 Protein_747 hypothetical protein -
  J5D26_RS03765 (J5D26_03765) - 811951..813288 (-) 1338 WP_209508361.1 restriction endonuclease subunit S -
  J5D26_RS03770 (J5D26_03770) - 813339..815399 (-) 2061 WP_209508363.1 heavy metal translocating P-type ATPase -
  J5D26_RS03775 (J5D26_03775) comM 815424..816944 (-) 1521 WP_209508365.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J5D26_RS03780 (J5D26_03780) def 816950..817474 (-) 525 WP_001185853.1 peptide deformylase -
  J5D26_RS03785 (J5D26_03785) clpP 817479..818066 (-) 588 WP_000540576.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  J5D26_RS03790 (J5D26_03790) tig 818087..819442 (-) 1356 WP_209508366.1 trigger factor -
  J5D26_RS03795 (J5D26_03795) - 819549..820385 (-) 837 WP_209508367.1 outer membrane protein -
  J5D26_RS03800 (J5D26_03800) hpaA 820407..821189 (-) 783 WP_209508369.1 HpaA family protein -
  J5D26_RS03805 (J5D26_03805) moaC 821308..821784 (-) 477 WP_209508371.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57260.25 Da        Isoelectric Point: 8.3899

>NTDB_id=480332 J5D26_RS03775 WP_209508365.1 815424..816944(-) (comM) [Helicobacter pylori strain MT5119]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNSNIFPMLLDIAIKRPHAKVIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDTYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYDTSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSVFNGKLNEEQIERFCPLNTEAQKLLEQAVERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=480332 J5D26_RS03775 WP_209508365.1 815424..816944(-) (comM) [Helicobacter pylori strain MT5119]
ATGATTAACACGATATTTTGTGCGACCATGCAAAGGGGGGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCCTGGCTAATAACTCTATCCAAGAAGCCAAACAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCCTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATTCTAACATTTTCCCCATGCTCTTAGATATTGCCATTAAGCGCCCCCATGCTAAAG
TCATTGCACCTAAGGCGAATGAAGAGCTTTTTTCGCTCATCCCTAATTTGCAATGTTTTTTTGTGGAGCATTTTAAAGAA
GCGTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCTTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACACCTACGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGTGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGCGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATTTTACCCCCCTTAAGCCTGAATGAAATTTTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCCTTAAGGAGTTTTAGAAACCCTCACCAGAGTGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
GAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCCCATTTTAAAAAGGAT
ATTTTGGAAGCCTTAAGAGAGCCTTTAGAAAACAATAAATTAGTGATCTCACGAGTGCATAGCAAGATTGAATACGACAC
CTCTTTTTTATTCGTAGGGGCTCAAAACCCTTGCCTGTGCGGGAATTTACTCAGCGCTACTAAAGCATGCCGTTGTCAAG
ATAGGGAAATTACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGACAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTAGTGTTATTAGCTTTCAAACAGCA
AAAATTAAGGAAACAGAGCGTTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAACGATTTTGCCCTTTAAATACTGAAG
CGCAAAAGTTGTTAGAGCAGGCGGTTGAAAGGTTTAATCTGTCCATGCGCTCTGTCAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.233

100

0.972
  comM Acinetobacter baylyi ADP1

36.399

100

0.368
  comM Legionella pneumophila str. Paris

36.454

99.209

0.362
  comM Legionella pneumophila strain ERS1305867

36.454

99.209

0.362