Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   SPN994038_RS02830 Genome accession   NC_021026
Coordinates   521307..521573 (+) Length   88 a.a.
NCBI ID   WP_001808618.1    Uniprot ID   -
Organism   Streptococcus pneumoniae SPN994038     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 516307..526573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN994038_RS02805 (SPN994038_05230) - 516570..517079 (+) 510 WP_000619952.1 GNAT family N-acetyltransferase -
  SPN994038_RS02810 (SPN994038_05240) pheT 517156..519561 (+) 2406 WP_000961504.1 phenylalanine--tRNA ligase subunit beta -
  SPN994038_RS02815 (SPN994038_05250) - 519629..520630 (-) 1002 WP_000597980.1 endonuclease/exonuclease/phosphatase family protein -
  SPN994038_RS11265 (SPN994038_05260) - 520778..521181 (+) 404 Protein_545 helix-turn-helix domain-containing protein -
  SPN994038_RS02830 (SPN994038_05270) HI0659 521307..521573 (+) 267 WP_001808618.1 helix-turn-helix domain-containing protein Machinery gene
  SPN994038_RS02835 (SPN994038_05280) metE 521834..524083 (+) 2250 WP_000108202.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  SPN994038_RS02840 (SPN994038_05290) metF 524147..525013 (+) 867 WP_000089968.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  SPN994038_RS13425 - 525195..525464 (-) 270 WP_001808932.1 hypothetical protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9622.15 Da        Isoelectric Point: 4.4893

>NTDB_id=48030 SPN994038_RS02830 WP_001808618.1 521307..521573(+) (HI0659) [Streptococcus pneumoniae SPN994038]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTLAI
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=48030 SPN994038_RS02830 WP_001808618.1 521307..521573(+) (HI0659) [Streptococcus pneumoniae SPN994038]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTAAAAGTCCTAGCCAGTTTAGGAAAGACACTAGCAATC
GTCCCACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

61.039

87.5

0.534

Multiple sequence alignment