Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMBM04240196_RS14950 Genome accession   NC_017515
Coordinates   612216..612680 (+) Length   154 a.a.
NCBI ID   WP_162467424.1    Uniprot ID   -
Organism   Neisseria meningitidis M04-240196     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 607216..617680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM04240196_RS14950 comE 612216..612680 (+) 465 WP_162467424.1 ComEA family DNA-binding protein Machinery gene
  NMBM04240196_RS15405 - 612875..613231 (-) 357 Protein_582 Caudovirus prohead protease -
  NMBM04240196_RS03215 (NMBM04240196_0580) - 613343..613936 (-) 594 WP_002222152.1 hypothetical protein -
  NMBM04240196_RS03220 (NMBM04240196_0581) prmB 614081..614980 (+) 900 WP_002239218.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  NMBM04240196_RS03225 (NMBM04240196_0582) - 615261..615998 (+) 738 WP_002220248.1 toxin-antitoxin system YwqK family antitoxin -
  NMBM04240196_RS03230 (NMBM04240196_0583) - 616124..616396 (+) 273 WP_002212673.1 ACT domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16557.90 Da        Isoelectric Point: 10.9585

>NTDB_id=48030 NMBM04240196_RS14950 WP_162467424.1 612216..612680(+) (comE) [Neisseria meningitidis M04-240196]
MLCPEKMSVMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=48030 NMBM04240196_RS14950 WP_162467424.1 612216..612680(+) (comE) [Neisseria meningitidis M04-240196]
TTGCTTTGCCCGGAAAAAATGTCGGTGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGACCAGG
CTTCGGTCGGCGCGCCCGCACCAAAAGGCCCAGCTAAACCGGTGCTGCCCGCAGTGAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

95.082

79.221

0.753
  comE Neisseria gonorrhoeae MS11

95.082

79.221

0.753
  comE Neisseria gonorrhoeae MS11

95.082

79.221

0.753
  comE Neisseria gonorrhoeae MS11

95.082

79.221

0.753

Multiple sequence alignment