Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMBM04240196_RS14945 Genome accession   NC_017515
Coordinates   318298..318768 (+) Length   156 a.a.
NCBI ID   WP_162467420.1    Uniprot ID   -
Organism   Neisseria meningitidis M04-240196     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 319493..320161 318298..318768 flank 725


Gene organization within MGE regions


Location: 318298..320161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM04240196_RS14945 comE 318298..318768 (+) 471 WP_162467420.1 helix-hairpin-helix domain-containing protein Machinery gene
  NMBM04240196_RS15080 - 318702..318911 (-) 210 Protein_310 peptidase -
  NMBM04240196_RS01755 (NMBM04240196_0312) - 319509..320161 (+) 653 Protein_311 IS1595 family transposase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 16757.15 Da        Isoelectric Point: 10.9958

>NTDB_id=48029 NMBM04240196_RS14945 WP_162467420.1 318298..318768(+) (comE) [Neisseria meningitidis M04-240196]
MLCPEKMSVMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=48029 NMBM04240196_RS14945 WP_162467420.1 318298..318768(+) (comE) [Neisseria meningitidis M04-240196]
TTGCTTTGCCCGGAAAAAATGTCGGTGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCGAAGGCCATTGCGGAATACCGTGC
GCAAAACGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGG
ACCAGGCTTCGGTCGGCGCGCCCGCACCAAAAGGCCCAGCTAAACCGGTGCTGCCCGCAGTGAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.548

79.487

0.744
  comE Neisseria gonorrhoeae MS11

93.548

79.487

0.744
  comE Neisseria gonorrhoeae MS11

93.548

79.487

0.744
  comE Neisseria gonorrhoeae MS11

93.548

79.487

0.744

Multiple sequence alignment